View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15402_high_22 (Length: 339)
Name: NF15402_high_22
Description: NF15402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15402_high_22 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 7e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 112 - 339
Target Start/End: Original strand, 35475571 - 35475802
Alignment:
| Q |
112 |
aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaatacannnnnnnnnaatacgataccaacttattatccctctcnnnnnnn |
211 |
Q |
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| T |
35475571 |
aagtcaataatcttcttacttactctatatttatggcaatagtaatactgaatacatttttttttaatacgataccaacttattatccctctcaaaaaaa |
35475670 |
T |
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| Q |
212 |
nnnnnn----gaaacttattatcctcatcctaaaaatgtaaaaaattcctttcatgatatattcttatatttattatactgctgctttatttgtccccct |
307 |
Q |
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| T |
35475671 |
aaaaacaaaagaaacttattatcctcatcctaaaaatgtaaaaaattcctttcatgatatattcttatatttattatactactgctttatttgtccccct |
35475770 |
T |
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| Q |
308 |
cacgttcccatatttgaactcaaaatggttgt |
339 |
Q |
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| T |
35475771 |
cacgttcccatatttgaactcacaatggttgt |
35475802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 87 - 125
Target Start/End: Original strand, 35475046 - 35475084
Alignment:
| Q |
87 |
ttagattagattatataccactctcaagtcaataatctt |
125 |
Q |
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| T |
35475046 |
ttagattagattatataccactctcaagtcaataatctt |
35475084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 35474991 - 35475029
Alignment:
| Q |
28 |
catgcacacgttagatgaatttgtggtgtatgcaaaatg |
66 |
Q |
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| T |
35474991 |
catgcacatgttagatgaatttgtggtgtatgcaaaatg |
35475029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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