View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15402_high_29 (Length: 321)
Name: NF15402_high_29
Description: NF15402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15402_high_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 30 - 299
Target Start/End: Complemental strand, 44112864 - 44112594
Alignment:
| Q |
30 |
aagatacaagagttgcctccacagggcattagtgaacagatacagagaaagaaggtcactggttttctttgtgtgtccaagagaagacaaagcggtgaga |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44112864 |
aagatacaagagttgcctccacagggcattagtgaacagatacagagaaagaaggtcactggttttctttgtgtgtccaagagaagacaaagtggtgaga |
44112765 |
T |
|
| Q |
130 |
cccccagaaaatttgttaagcaaaaatgaggcaagaaagtaccctgattttacatggtcaagtttgtttgaatttacacaaaagcaccacagagctgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
44112764 |
cccccagaaaatttgttaagcaaaaatgaggcaagaaagtaccctgattttacatggtcaagtttgtttgaatttacacaaaaacactacagagctgatg |
44112665 |
T |
|
| Q |
230 |
ttgctacgctccaaagcttctttcagtggcattcctcttgcaacttat-attaatcgtatgatatgatgat |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
44112664 |
ttgctacgctccaaagcttctttcagtggcattcctcttgcaacttataattaatcatatgatatgatgat |
44112594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University