View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15402_high_5 (Length: 444)
Name: NF15402_high_5
Description: NF15402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15402_high_5 |
 | |
|
| [»] scaffold0078 (3 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 400; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 1963320 - 1962905
Alignment:
| Q |
1 |
aatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1963320 |
aatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacattgtttgtccaaccatgtcagacactcaaacttatta |
1963221 |
T |
|
| Q |
101 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1963220 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcatctgtcattgcttctataggaccct |
1963121 |
T |
|
| Q |
201 |
tttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttg |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963120 |
tttcaatttccaggaagctattaataagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttg |
1963021 |
T |
|
| Q |
301 |
agctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaac |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963020 |
agctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaac |
1962921 |
T |
|
| Q |
401 |
ttgagcaaatggaagt |
416 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
1962920 |
ttgagcaaatggaagt |
1962905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 2015109 - 2015524
Alignment:
| Q |
1 |
aatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatta |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| || ||||| ||||||| |||||||||||| |||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
2015109 |
aatttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtttgtccaaccatgccagacattcaaacttatta |
2015208 |
T |
|
| Q |
101 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
2015209 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcagtgcttctataggaccgt |
2015308 |
T |
|
| Q |
201 |
tttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttg |
300 |
Q |
| |
|
|||| ||||| | ||| |||||||| |||| ||||||||||||||| ||||||||||||| |||||| ||| | |||||||||||||| ||||||||||| |
|
|
| T |
2015309 |
tttcgatttctatgaaactattaataagaataccatcaaaaagacgcaatttttcaacaccttggagtaagtatttgtaagattgactggatctatcttg |
2015408 |
T |
|
| Q |
301 |
agctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaac |
400 |
Q |
| |
|
|||||| |||| || |||||||||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||| ||||| ||||||||||| ||| |
|
|
| T |
2015409 |
agctagctcaaaaagatcccgaccatgaatcggaacactacctggtatttgaataggcccaggaagatctctgtactcgcatgatgtttccttatctaac |
2015508 |
T |
|
| Q |
401 |
ttgagcaaatggaagt |
416 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
2015509 |
ttgagcaaatagaagt |
2015524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 416
Target Start/End: Original strand, 2018492 - 2018907
Alignment:
| Q |
1 |
aatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||| |||||||| ||| |||| |
|
|
| T |
2018492 |
aatttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgtttgtccaaccatgccagacacttcaacccatta |
2018591 |
T |
|
| Q |
101 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccct |
200 |
Q |
| |
|
|||||||||| ||| | ||| | ||||||||||| |||||||||||||| ||| | |||| |||||| || ||||| | ||||||||||||||| | |
|
|
| T |
2018592 |
tcatcatcacccgatttggttggcgtttggataattggtccaacagcataaacatcagggttgccacttctgtcttctgtgagtgcttctataggacctt |
2018691 |
T |
|
| Q |
201 |
tttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttg |
300 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| || || ||||| |||||||||||||||||||||||||| |
|
|
| T |
2018692 |
tttcaatttctaggaagctattaataagaataccatcaaaaagacggaatttttcaacacgttcaagtaagaatttgtaagattgacttgatctatcttg |
2018791 |
T |
|
| Q |
301 |
agctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaac |
400 |
Q |
| |
|
|||| |||||| || |||| |||||||||| || ||||| ||||||||||||||||||||| |||||||| |||||| |||||| |||||||||| |||| |
|
|
| T |
2018792 |
agcttggtcaacaagatcctgaccatgaattggtacacagcctggtatttgaataggctctagaagatctttgtactgacatgatgtttccttattcaac |
2018891 |
T |
|
| Q |
401 |
ttgagcaaatggaagt |
416 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
2018892 |
ttgagcaaatagaagt |
2018907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 2011710 - 2012124
Alignment:
| Q |
1 |
aatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatta |
100 |
Q |
| |
|
||||||||| || |||||||| ||||||||||| ||||| ||||||||||||||||||| |||||||||| |||||| ||||||||| || |||| |
|
|
| T |
2011710 |
aatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatta |
2011809 |
T |
|
| Q |
101 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccct |
200 |
Q |
| |
|
||||||||| |||| ||||| ||| ||||| ||||||||||||| ||| ||| | |||| |||||||||| ||||||| ||| | |||||| ||| |
|
|
| T |
2011810 |
gcatcatcaacagaacctgttactgtctggatgatgggtccaacaggatagacagaagggttgccacttccttcctctgtcaatgcatttataggtccca |
2011909 |
T |
|
| Q |
201 |
tttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttg |
300 |
Q |
| |
|
|||| ||||| | ||||||||||| |||||||||||| || || || ||| |||| ||| || ||| | ||||||| |||||||||||||||||| |
|
|
| T |
2011910 |
tttccatttctaagaagctattaacaagaacaccatcagcaaaacttaaacttttaacatgttgaaggaagtatttgtaagcttgacttgatctatcttg |
2012009 |
T |
|
| Q |
301 |
agcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaa |
399 |
Q |
| |
|
| ||| ||||||| | ||||| ||||| | || || || || |||| || ||||||||||| ||||||||||||||||||| ||||||| |||||| |
|
|
| T |
2012010 |
aactatggtcaag-agatccctgccatggagtggtacgcagcccggtactttgataggctctgggagatctctgtactcacatgttgtttcctcatccaa |
2012108 |
T |
|
| Q |
400 |
cttgagcaaatggaag |
415 |
Q |
| |
|
||| |||||| |||| |
|
|
| T |
2012109 |
cttaggcaaatagaag |
2012124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 1 - 415
Target Start/End: Original strand, 2008095 - 2008509
Alignment:
| Q |
1 |
aatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatta |
100 |
Q |
| |
|
|||||| || || |||||||| || ||||| |||||||| ||||||||||| |||||||| | ||||| |||||||| ||||||||| || |||| |
|
|
| T |
2008095 |
aatttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctgtttatccaaccaggccagacactccaagccatta |
2008194 |
T |
|
| Q |
101 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccct |
200 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||| |||||||||| |||||| || |||| |||| ||| || ||| ||||||| || ||||||| |
|
|
| T |
2008195 |
gcatcatcaccagattttgtttctgtttcgataataggtccaacaggatacactggagggttgtcacctccctcctctttcattgcacttagaggaccca |
2008294 |
T |
|
| Q |
201 |
tttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttg |
300 |
Q |
| |
|
| || ||||| ||||||||||||| |||||||||||| | || || || |||| || |||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
2008295 |
tctctatttctaggaagctattaacaagaacaccatcagcagaacttaaaagtttaacaaatgggaggaagtgtttgtaagcttgacttgatctatcttg |
2008394 |
T |
|
| Q |
301 |
agcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaa |
399 |
Q |
| |
|
||||| | ||||| ||||||| ||||| | || |||||||||||||||| ||||||||| | | |||||| ||||||||||| ||||||| ||||| |
|
|
| T |
2008395 |
agctatgctcaag-aaatccctgccatggagtggtacacaacctggtatttttataggctctagtatatctctatactcacatgatgtttcctcatccag |
2008493 |
T |
|
| Q |
400 |
cttgagcaaatggaag |
415 |
Q |
| |
|
||| |||||| |||| |
|
|
| T |
2008494 |
cttaggcaaatagaag |
2008509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 71 - 259
Target Start/End: Complemental strand, 2433139 - 2432951
Alignment:
| Q |
71 |
tccaaccatatcagacactcaaacttattagcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttc |
170 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||||||||| |||| |||||| ||| ||||| ||||||||||||| |||||||||| | |||||||||| |
|
|
| T |
2433139 |
tccaaccatgacagacactccaacatattagcatcatcgtcagaacttgttattgtctggatgatgggtccaacaggatacacaagaggattttcacttc |
2433040 |
T |
|
| Q |
171 |
cttcgtctgtcattgcttctataggacccttttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaaca |
259 |
Q |
| |
|
|||| ||||||| ||||| |||||||||| |||| ||||| | ||||||||||| ||||||||||||| || |||| |||||| |||| |
|
|
| T |
2433039 |
cttcatctgtcagtgcttttataggacccctttccatttctaagaagctattaacaagaacaccatcaacaaaacggtattttttaaca |
2432951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 398
Target Start/End: Complemental strand, 1968920 - 1968523
Alignment:
| Q |
1 |
aatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatta |
100 |
Q |
| |
|
||||||||| || |||||||| |||||||| || ||||| |||||||||||||| ||||| | ||||| |||||||| ||||||||| || |||| |
|
|
| T |
1968920 |
aatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttatccaaccaggccagacactccaagccatta |
1968821 |
T |
|
| Q |
101 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccct |
200 |
Q |
| |
|
||||||||||| || ||||| |||||||||||| |||||||||| |||||| || |||| |||||||| || ||| ||||||| |||||| ||| |
|
|
| T |
1968820 |
gcatcatcacctgaacttgtttctgtttggataattggtccaacaggatacactggagggttgtcacttccctcctctttcattgcacttataggtccca |
1968721 |
T |
|
| Q |
201 |
tttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttg |
300 |
Q |
| |
|
| || | ||||||||||||||||| | |||||||||| || || || || || | | |||| ||| |||||| |||||||||||||||||| |
|
|
| T |
1968720 |
tctccaattccaggaagctattaacaaaaacaccatcagcaaaacttaaaagtttaaaaagtgggaggaagtgtttgtaaacttgacttgatctatcttg |
1968621 |
T |
|
| Q |
301 |
agcta-ggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatcca |
398 |
Q |
| |
|
||||| | ||||| | ||||| ||||| || || ||||| |||||||||| ||||||||||| | |||||| ||||||||||| ||||||| ||||| |
|
|
| T |
1968620 |
agctacgctcaag-agatccctgccatggattggtacacagcctggtatttttataggctctggtatatctctatactcacatgatgtttcctcatcca |
1968523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 2004715 - 2004952
Alignment:
| Q |
1 |
aatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatta |
100 |
Q |
| |
|
|||||||||||| |||||||| || ||||| |||||||| |||||||||||||||||||| | ||||| ||||||||| | ||||| || ||| || | |
|
|
| T |
2004715 |
aatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgtttatccaaccatgttagacattccaacccatga |
2004814 |
T |
|
| Q |
101 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccct |
200 |
Q |
| |
|
| ||||||| || || || || |||| ||||||||||||| ||||||| || |||||||||||||||| ||| ||||||| |||||||||| |
|
|
| T |
2004815 |
ttagcatcaccggaactttctatcgtcgggatgatgggtccaacaggatacacaggagggttttcacttccttcatctttcattgcacttataggaccca |
2004914 |
T |
|
| Q |
201 |
tttcaatttccaggaagctattaattagaacaccatca |
238 |
Q |
| |
|
| || ||||| ||||||||||||| |||||||||||| |
|
|
| T |
2004915 |
tctccatttctaggaagctattaacaagaacaccatca |
2004952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 1964984 - 1964747
Alignment:
| Q |
1 |
aatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatta |
100 |
Q |
| |
|
||||||||| || |||||||| |||||||| || ||||| ||||||||||||||||||| |||||||||| |||||| ||||||||| || |||| |
|
|
| T |
1964984 |
aatttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaactgaacaagattgttgtttgtctaaccatgacagacactccaaaccatta |
1964885 |
T |
|
| Q |
101 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccct |
200 |
Q |
| |
|
|||||| |||| ||||| ||| | ||| ||||||||||||| ||||||| | |||| |||||||||| |||||| ||||| |||||| ||| |
|
|
| T |
1964884 |
gcatcacggtcagaacatgttactgtatcgatgatgggtccaacaggatacacagaagggttgccacttccttcctctgtcggtgcttttataggtccca |
1964785 |
T |
|
| Q |
201 |
tttcaatttccaggaagctattaattagaacaccatca |
238 |
Q |
| |
|
|||| ||||| | ||||||||||| |||||||||||| |
|
|
| T |
1964784 |
tttccatttctaagaagctattaacaagaacaccatca |
1964747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 275 - 415
Target Start/End: Original strand, 2004989 - 2005129
Alignment:
| Q |
275 |
ttgtaagattgacttgatctatcttgagctagg-tcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctg |
373 |
Q |
| |
|
||||||| ||||||||| |||||||||| | || ||| || | |||| ||||| || || |||||||||||||||| |||||| |||| | ||||| |
|
|
| T |
2004989 |
ttgtaagcttgacttgacctatcttgagttgggctcatgaga-tccctgccatggattggtacacaacctggtatttttataggcactggtatatctcca |
2005087 |
T |
|
| Q |
374 |
tactcacatgaagtttccttatccaacttgagcaaatggaag |
415 |
Q |
| |
|
||||||||||| ||||| | ||||||||| |||||| |||| |
|
|
| T |
2005088 |
tactcacatgatgtttcttcatccaacttaggcaaatagaag |
2005129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 6e-81; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 5902493 - 5902084
Alignment:
| Q |
1 |
aatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactcaaacttatta |
100 |
Q |
| |
|
|||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| | |||||| |||||||||| | || |
|
|
| T |
5902493 |
aatttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggttgttgtttatgtaaccatgtcagacactcca------ta |
5902400 |
T |
|
| Q |
101 |
gcatcatcaccagatgttgttagtgtttggataatgggtccaacagcatacacaagaaggttttcacttccttcgtctgtcattgcttctataggaccct |
200 |
Q |
| |
|
||| || ||||||| |||| |||||||||||||||||||| || |||||| | |||| |||||||||| ||||||| ||||||||||||||| | |
|
|
| T |
5902399 |
ccattattaccagattctgttcttgtttggataatgggtccaatagggtacacagcagggttaccacttccttcttctgtcagtgcttctataggacctt |
5902300 |
T |
|
| Q |
201 |
tttcaatttccaggaagctattaattagaacaccatcaaaaagacggaatttttcaacacattggagaaagaacttgtaagattgacttgatctatcttg |
300 |
Q |
| |
|
||||||||||||||||||||||||| || | ||||||| | || |||| ||| || || |||||| ||||| ||||||||||| || ||||||||||| |
|
|
| T |
5902299 |
tttcaatttccaggaagctattaataagtatgccatcaacagaacagaatcttttaatacgttggagtaagaatttgtaagattggctcgatctatcttg |
5902200 |
T |
|
| Q |
301 |
agctaggtcaagaaaatcccgaccatgaatcgggacacaacctggtatttgaataggctctggaagatctctgtactcacatgaagtttccttatccaac |
400 |
Q |
| |
|
|||| || ||| | |||||||||| |||| || |||||||||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
5902199 |
agcttgggcaacgagatcccgaccacgaattggtacacaacctggtgcttgaataggttctggcagatctctgtactcacatgatgtttccttatccaat |
5902100 |
T |
|
| Q |
401 |
ttgagcaaatggaagt |
416 |
Q |
| |
|
|||||||||| ||||| |
|
|
| T |
5902099 |
ttgagcaaatagaagt |
5902084 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 5905975 - 5905888
Alignment:
| Q |
3 |
tttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacgttgtttgtccaaccatatcagacactc |
90 |
Q |
| |
|
|||||||||| ||||||| ||||| || ||||||||||||||||||||||||||||| | ||||| || |||||| ||| |||||| |
|
|
| T |
5905975 |
tttgttcttgtgaaagtgcaccaccgcttccaaaagaaacatacaaaactgaacaaggctgctgtttatctaaccatgtcaaacactc |
5905888 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 22096 - 22055
Alignment:
| Q |
14 |
gaaagtgtgccaccactaccaaaagaaacatacaaaactgaa |
55 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
22096 |
gaaagtgttccaccacttccaaaagaaacatacaaaactgaa |
22055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 2842 - 2805
Alignment:
| Q |
14 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
51 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
2842 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
2805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 57385 - 57348
Alignment:
| Q |
14 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
51 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
57385 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
57348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 15459 - 15496
Alignment:
| Q |
14 |
gaaagtgtgccaccactaccaaaagaaacatacaaaac |
51 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
15459 |
gaaagtgttccaccacttccaaaagaaacatacaaaac |
15496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 415
Target Start/End: Complemental strand, 18189931 - 18189870
Alignment:
| Q |
354 |
taggctctggaagatctctgtactcacatgaagtttccttatccaacttgagcaaatggaag |
415 |
Q |
| |
|
|||||||||| |||| |||||||||||||| ||||||| ||||||||| |||||| |||| |
|
|
| T |
18189931 |
taggctctggtagatttctgtactcacatgttgtttcctcatccaacttaggcaaatagaag |
18189870 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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