View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15402_high_7 (Length: 429)
Name: NF15402_high_7
Description: NF15402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15402_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 30 - 403
Target Start/End: Complemental strand, 37837949 - 37837576
Alignment:
| Q |
30 |
aaagagacatgaacgtcgtatcttttggacatgtagactaaggttctttcgatgatggtcccatgttgatgtttgagtgaaaattaggtttgtaatttaa |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37837949 |
aaagagacatgaacgtcgtatcttttggacatgcagactaaggttctttcgatgatggtcccatgttgatgtttgagtgaaaattaggtttgtaatttaa |
37837850 |
T |
|
| Q |
130 |
agtttcaacagctgtaaggaaagtatcacgctactatagcagttgcacttatttaaaatttattaatggtaatttaatttactccacaatttattatggc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37837849 |
agtttcaacagctgtaaggaaagtatcacgctactatagcagttgcacttatttaaaatttattaatggtaatttaattcactccacaatttattatggc |
37837750 |
T |
|
| Q |
230 |
tattctcctttaatgaatatttattgctttgcctattaagaacctaggataaacatgatctcttttaattcttacccattttataagtttcacacacgtt |
329 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37837749 |
tattctcctttaatgaatatttattgctttgcctattaagaacctaggataaacatgatctcttttaattcttacccattttataagtttcacacacgtt |
37837650 |
T |
|
| Q |
330 |
tgtggttcaaacgcacgcatgccccgaaatatttgaaaccttatcttgctctattgtgacacattgaatgatga |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37837649 |
tgtggttcaaacgcacgcatgccccgaaatatttgaaaccttatcttgctctattgtgacacattgaatgatga |
37837576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University