View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15403_high_3 (Length: 426)
Name: NF15403_high_3
Description: NF15403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15403_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 12 - 411
Target Start/End: Original strand, 38513618 - 38514018
Alignment:
| Q |
12 |
tagattatacttatcacaggataaacttgagtctgaaaatgcaatatccatcatctattcaagccctaaatgttggtaaatgctaatatatgtcttaatg |
111 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38513618 |
tagattatacttatcacatgataaacttgagtctgaaaatgcaatatccatcatctattcaagccctaaatgttggtaaatgctaatatatgtcttaatg |
38513717 |
T |
|
| Q |
112 |
acacatattaaagaactcataatagaaattgtttaaaaattgtgtattcaacttttaaaatttaaagtcacatttttaatnnnnnnnnnnnnnnctttta |
211 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
38513718 |
acacatattaaagaacttataatagaaattgtttaaaaattgtgtattcaacttttaaaatttaaagtcacatttttattcaaaaaaaaataaaaaatta |
38513817 |
T |
|
| Q |
212 |
aagtcacaattttgttttttccaatatacaatcatgctccatttaaattctctgaagtgcattcttaggccataagttagtaagact-nnnnnnnntgtt |
310 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
38513818 |
aagtcacaattttgttttttccaatacacaatcatgctccatttaaattctctgaagtgcattcttaggccataagttaacaagactaaaaaaaaatgtt |
38513917 |
T |
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| Q |
311 |
tgnnnnnnnnnnnnataaaaaagtttgtttaatgagatcattaagtaaaggacatttttagaacgatattaacatttgagacattgtcgttggttgaaat |
410 |
Q |
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| T |
38513918 |
tgttttttctttttataaaaaagtttgttcaatgagatcattaagtaaaggacatttttatagcgatattaacatttgagacattgtcgttggttgaaat |
38514017 |
T |
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| Q |
411 |
t |
411 |
Q |
| |
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| |
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| T |
38514018 |
t |
38514018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 140
Target Start/End: Original strand, 42066640 - 42066674
Alignment:
| Q |
106 |
ttaatgacacatattaaagaactcataatagaaat |
140 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
42066640 |
ttaatggcacatattaaagaactcataatagaaat |
42066674 |
T |
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