View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15403_low_2 (Length: 472)
Name: NF15403_low_2
Description: NF15403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15403_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 17 - 464
Target Start/End: Complemental strand, 34629093 - 34628646
Alignment:
| Q |
17 |
atttggaatgtaacatgtgtggtttgataacgggtggcataatggatcttagttaggttatgatattatcttaaaatttgggttggatcagacaattgaa |
116 |
Q |
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| T |
34629093 |
atttggaatgtaacatgtgtggtctgataacgggtggcataatggatcttagttaggttatgatattatcttaaaatttgggttggatcagacaattgaa |
34628994 |
T |
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| Q |
117 |
gtgtgatatatgggtggtctaatattgggtggcccgatattttttgaataggctctgataccgtcttaaaattcggatagacctaaactcaaccttaaaa |
216 |
Q |
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| T |
34628993 |
gtgtgatatatgggtggtctaatattgggtggcccgatattttttgaataggctttgataccgtcttaaaattcagatagacctaaactcaaccttaaaa |
34628894 |
T |
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| Q |
217 |
aatcagcttgtaaggtgagagatgtctttcatataatgcgggaatataacactgtatatgactagggtttgtgttcttttccattagttgcaaaatctag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34628893 |
aatcagcttgtaaggtgagagatgtctttcatataatgcgggaatataacactgtatatgactagggtttgtgttcttttccattagttgcataatctag |
34628794 |
T |
|
| Q |
317 |
tcttcaaagtgtcttgaggactgctcatgttttcatatgaatgatttcatatggttttgttatgtactttctattatgctctttgtcaaattaggcactt |
416 |
Q |
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| T |
34628793 |
tcttcaaagtgtcttgaggactgctcatgttttcatatgaatgatttcatatggttttgttatgtactctctattatgctctttgtcaaattaggcactt |
34628694 |
T |
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| Q |
417 |
aattgatgaagaaagattttgatttaagaatatatctatatctgtgct |
464 |
Q |
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| T |
34628693 |
aattgatgaagaaagattttgatttaagaatatatctatatctatgct |
34628646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 238
Target Start/End: Original strand, 24594331 - 24594367
Alignment:
| Q |
202 |
aactcaaccttaaaaaatcagcttgtaaggtgagaga |
238 |
Q |
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| T |
24594331 |
aactcaaccttacaaaatcaacttgtaaggtgagaga |
24594367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 32344777 - 32344815
Alignment:
| Q |
202 |
aactcaaccttaaaaaatcagcttgtaaggtgagagatg |
240 |
Q |
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| T |
32344777 |
aactcaaccctaaaaaatcagcttgtaaggtaagagatg |
32344815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 202 - 235
Target Start/End: Original strand, 17557730 - 17557763
Alignment:
| Q |
202 |
aactcaaccttaaaaaatcagcttgtaaggtgag |
235 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
17557730 |
aactcaaccttacaaaatcagcttgtaaggtgag |
17557763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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