View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15403_low_4 (Length: 391)

Name: NF15403_low_4
Description: NF15403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15403_low_4
NF15403_low_4
[»] chr6 (8 HSPs)
chr6 (1-263)||(7225902-7226179)
chr6 (1-150)||(7206958-7207107)
chr6 (1-150)||(7239692-7239841)
chr6 (172-263)||(7205674-7205765)
chr6 (172-263)||(7225734-7225825)
chr6 (12-99)||(7242060-7242147)
chr6 (65-93)||(6757632-6757660)
chr6 (65-93)||(6775779-6775807)
[»] chr8 (2 HSPs)
chr8 (62-97)||(27663261-27663296)
chr8 (62-96)||(30442960-30442994)
[»] chr7 (1 HSPs)
chr7 (62-96)||(19592189-19592223)
[»] chr2 (3 HSPs)
chr2 (12-90)||(22609680-22609758)
chr2 (12-60)||(22609340-22609388)
chr2 (12-60)||(22609459-22609507)
[»] scaffold0299 (1 HSPs)
scaffold0299 (65-93)||(12433-12461)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 7e-99; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 7226179 - 7225902
Alignment:
Q  1 actttgcttacggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcgacgagtgtaatttctttgattaaatataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7226179 actttgcttacggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcgacgagtgtaatttctttgattaaatataac 7226080  T
Q  101 tgatttgagacgcattgaagaaggtaaatgttatcataaacatatacactannnnnnnnaatgattgatac--------------tattgtattttattg 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||        ||||| ||||||              |||||||||||||||    
T  7226079 tgatttgagacgcattgaagaaggtaaatgttatcataaacatatacactattttttttaatgactgatactattgtattttttttattgtattttattg 7225980  T
Q  187 tgaggcgcattatctgttgtttatttgaattttcagtttttatcctaccggc-tttgttgattgactggttgtaaatg 263  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||||    
T  7225979 tgaggcgcattatatgttgtttatttgaattttcagtttttatcctaatggcttttgttgattgactggttgtaaatg 7225902  T

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Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 7207107 - 7206958
Alignment:
Q  1 actttgcttacggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcgacgagtgtaatttctttgattaaatataac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7207107 actttgcttacggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcgacgagtgtaatttctttgattaaatataac 7207008  T
Q  101 tgatttgagacgcattgaagaaggtaaatgttatcataaacatatacact 150  Q
    ||||||||||  |||| |||||||||| ||||||||||||||||| ||||    
T  7207007 tgatttgagatacatttaagaaggtaattgttatcataaacatatgcact 7206958  T

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Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 7239841 - 7239692
Alignment:
Q  1 actttgcttacggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcgacgagtgtaatttctttgattaaatataac 100  Q
    |||| |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||    
T  7239841 acttggcttacagatcatcatttatgacatgatcaaatatttcttccatgctgctctgcagaaatcttcgatgaatgtaatttatttgattaaatataac 7239742  T
Q  101 tgatttgagacgcattgaagaaggtaaatgttatcataaacatatacact 150  Q
    |||||||||| |||||||| | ||||| |||||| |||||||||||||||    
T  7239741 tgatttgagaggcattgaacagggtaagtgttatgataaacatatacact 7239692  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 7205765 - 7205674
Alignment:
Q  172 tattgtattttattgtgaggcgcattatctgttgtttatttgaattttcagtttttatcctaccggctttgttgattgactggttgtaaatg 263  Q
    ||||||||||||||||||| | |||||||| ||||||||| ||||||| |||||| |||| | |||||||||||||||||||||||||||||    
T  7205765 tattgtattttattgtgagacacattatctattgtttattggaatttttagttttaatccaaacggctttgttgattgactggttgtaaatg 7205674  T

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Target: chr6; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 172 - 263
Target Start/End: Complemental strand, 7225825 - 7225734
Alignment:
Q  172 tattgtattttattgtgaggcgcattatctgttgtttatttgaattttcagtttttatcctaccggctttgttgattgactggttgtaaatg 263  Q
    |||||||||||||| |||||| |||||| |||||||||||||||||||  ||||| || ||| | |||||||||||||||||||||||||||    
T  7225825 tattgtattttattatgaggcacattatttgttgtttatttgaatttttcgttttaattctaacagctttgttgattgactggttgtaaatg 7225734  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 7242147 - 7242060
Alignment:
Q  12 ggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcga-cgagtgtaatttctttgattaaatataa 99  Q
    ||||||| || |||||||||||||||| ||| ||||||| ||||||||| |||  ||| | ||||||| ||||||||||||||| ||||    
T  7242147 ggatcatgatatatgacatgatcaaatcttt-atccatgttgctctgcaaaaaaattccagcgagtgtgatttctttgattaaacataa 7242060  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 6757660 - 6757632
Alignment:
Q  65 tcttcgacgagtgtaatttctttgattaa 93  Q
    |||||||||||||||||||||||||||||    
T  6757660 tcttcgacgagtgtaatttctttgattaa 6757632  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 93
Target Start/End: Complemental strand, 6775807 - 6775779
Alignment:
Q  65 tcttcgacgagtgtaatttctttgattaa 93  Q
    |||||||||||||||||||||||||||||    
T  6775807 tcttcgacgagtgtaatttctttgattaa 6775779  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 97
Target Start/End: Complemental strand, 27663296 - 27663261
Alignment:
Q  62 aaatcttcgacgagtgtaatttctttgattaaatat 97  Q
    |||||| |||||||||||||||||||||||||||||    
T  27663296 aaatctccgacgagtgtaatttctttgattaaatat 27663261  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 30442994 - 30442960
Alignment:
Q  62 aaatcttcgacgagtgtaatttctttgattaaata 96  Q
    ||||||||||||||||| |||||||||||||||||    
T  30442994 aaatcttcgacgagtgtgatttctttgattaaata 30442960  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 96
Target Start/End: Original strand, 19592189 - 19592223
Alignment:
Q  62 aaatcttcgacgagtgtaatttctttgattaaata 96  Q
    ||||||||||||||||| |||||||||||||||||    
T  19592189 aaatcttcgacgagtgtgatttctttgattaaata 19592223  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 22609758 - 22609680
Alignment:
Q  12 ggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgcagaaatcttcgacgagtgtaatttctttgat 90  Q
    ||||||| ||||||||||||||||||| ||| ||||||  ||||||||| ||| || | |||| | | |||||||||||    
T  22609758 ggatcatgatttatgacatgatcaaatcttttatccattttgctctgcaaaaaactccaacgactatgatttctttgat 22609680  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 22609340 - 22609388
Alignment:
Q  12 ggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgca 60  Q
    ||||||| ||||||||||||||||||| ||| ||||||| |||| ||||    
T  22609340 ggatcatgatttatgacatgatcaaatattttatccatgttgctttgca 22609388  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 12 - 60
Target Start/End: Complemental strand, 22609507 - 22609459
Alignment:
Q  12 ggatcatcatttatgacatgatcaaatgtttcatccatgctgctctgca 60  Q
    |||||||  |||||||||||||||||| ||| ||||||| |||||||||    
T  22609507 ggatcatggtttatgacatgatcaaatcttttatccatgttgctctgca 22609459  T

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Target: scaffold0299 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 93
Target Start/End: Original strand, 12433 - 12461
Alignment:
Q  65 tcttcgacgagtgtaatttctttgattaa 93  Q
    |||||||||||||||||||||||||||||    
T  12433 tcttcgacgagtgtaatttctttgattaa 12461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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