View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15404_low_1 (Length: 528)
Name: NF15404_low_1
Description: NF15404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15404_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 450
Target Start/End: Complemental strand, 7258338 - 7257902
Alignment:
| Q |
8 |
cagcagagagatttatcatactaaaagaatgcaaaggttcactcaatatacatattgtgcactgaacattctgttgtgtttaattgtccgcttaactttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7258338 |
cagcagagagatttatcatactaaaagaatgcaaaggttcactcaatatacatattgtgcactgaacattctgttgtgtttaattgtccgcttaactttt |
7258239 |
T |
|
| Q |
108 |
cgaacgatacatacctcagctgtttaaaagatttcttttgctgtttgtgtcgagtttatggaaatattcttatcttgctctatggcagctaatcttcttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7258238 |
cgaacgatacatacctcagctgtttaaaagatttcttttgctgtttgtgtcgagtttatggaaatattcttatcttgctctatggcagctaatcttcttc |
7258139 |
T |
|
| Q |
208 |
ttttgttcacagggtattctgtgtcaagttcagtggcgatggaagttatgttatttcaggaagtgatgatactaacctcagactttggaaggccaaagca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7258138 |
ttttgttcacagggtattctgtgtcaagttcagtggcgatggaagttatgttatttcaggaagtgatgatactaacctcagactttggaaggccaaagca |
7258039 |
T |
|
| Q |
308 |
tcagaacaacttggagtagtaagttgatttcattgttgattcattcatcctctttttttacacacac-----acnnnnnnnnnnnnnnctgtcatctatt |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
7258038 |
tcagaacaacttggagtagtaagttgattt-----------cattcatcctctttttttacacacacaaaaaaaaaaaaaaaaaaaaactgtcatctatt |
7257950 |
T |
|
| Q |
403 |
aattgtggttcatgttgtactaagattgaaattctattataactgtga |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7257949 |
aattgtggttcatgttgtactaagattgaaattctattataactgtga |
7257902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 456 - 518
Target Start/End: Complemental strand, 7257862 - 7257800
Alignment:
| Q |
456 |
ttaataatttctcttctgagaggcccttcaattcattccgagattcacctgtttatgatgatg |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7257862 |
ttaataatttctcttctgagaggcccttcagttcattccgagattcacctgtttatgatgatg |
7257800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University