View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15404_low_2 (Length: 453)
Name: NF15404_low_2
Description: NF15404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15404_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 19 - 437
Target Start/End: Complemental strand, 2341312 - 2340896
Alignment:
| Q |
19 |
cctaatgaaagaaactgagggttcttggagcaatggaagtgataatagcttaaacattaatttagatctttcaagaacacaagctttgaacagttctatt |
118 |
Q |
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| T |
2341312 |
cctaatgaaagaaactgagggttcttggagcaatggaagtgataatagcttaaacattaatttagatctctcaagaacacaagctttgaacagttctgtt |
2341213 |
T |
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| Q |
119 |
tcttcacagaatggtagaaacctaattagccttctaccaacttcattaaatccaaacaacataccccaacttcttcaattcacatcaagaccagatattc |
218 |
Q |
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| T |
2341212 |
tcttcacagaatggtagaaacctaattagccttctaccaacttcattaaatccaaacaacataccccaacttcttcaattcacatcaagaccagatattc |
2341113 |
T |
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| Q |
219 |
aagatgaaaacttcagcagcatgtttcacaacattgatgagcatcagaacctctggccttggacatagatgcatcattttcattggccttaatactaatg |
318 |
Q |
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| T |
2341112 |
aagatgaaaacttcagcagcatgtttcacaacattgatgagcatcagaacctctggccttgggcatagatgcatcattttcattggccttattatta--- |
2341016 |
T |
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| Q |
319 |
attttcgatatcattgatcaattggttcaaaattgcgataagagttacgctgcaaaccttaatattg-tgcaaaatacagaagaatgtgactaatgtgga |
417 |
Q |
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| T |
2341015 |
attttggatatcattgatcaaatggttcaaaattgcgattagagttatgctgcaaaccttattattgcggaaaaatacagaagaatgtgactaatgtgga |
2340916 |
T |
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| Q |
418 |
gacaattgcagttacaaact |
437 |
Q |
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| T |
2340915 |
gacaattgcagttacaaact |
2340896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 98
Target Start/End: Complemental strand, 3352029 - 3351957
Alignment:
| Q |
26 |
aaagaaactgagggttcttggagcaatggaagtgataatagcttaaacattaatttagatctttcaagaacac |
98 |
Q |
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| T |
3352029 |
aaagaaaatgaaggttcttggagcaatggaagtgataacagctcagatatgaatctagacctttctagaacac |
3351957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 282
Target Start/End: Complemental strand, 3351909 - 3351830
Alignment:
| Q |
203 |
tcaagaccagatattcaagatgaaaacttcagcagcatgtttcacaacattgatgagcatcagaacctctggccttggac |
282 |
Q |
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|||||| ||||| |||||||||||| ||| ||| ||||||| |||||||||||||||| |||| | ||||||||||| |
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| T |
3351909 |
tcaagatcagatcttcaagatgaaagcttttgcaacatgtttaacaacattgatgagcagcagagtttatggccttggac |
3351830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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