View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15404_low_3 (Length: 408)
Name: NF15404_low_3
Description: NF15404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15404_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 23 - 391
Target Start/End: Original strand, 34214826 - 34215197
Alignment:
| Q |
23 |
cttgaactaaatgacccatattgactaacctatcagcacaac-------agataccttcgtggtaattattaaaagaaataacttgaacaccggtattat |
115 |
Q |
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| T |
34214826 |
cttgaaccaaatgacccatattgactaacctgtcagcacaacgcacaacagataccttcgtggtaattattaaaagaaataacttgaacaccggtattat |
34214925 |
T |
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| Q |
116 |
gcc-atctgtttcgaagcataattgggactaaagaagcatttctaaaaatcatgagagcactagttgagtcgatttctaacgaaactgttgattcttttt |
214 |
Q |
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| T |
34214926 |
gcccatctatttcgaagcataattgggactaaagaagcatttctaaaaatcacgag-----tagttgagtcgatttctaacgaaactgttgattcttttt |
34215020 |
T |
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| Q |
215 |
tacatcatctctcactcttggaagcaacagaaacttgtagaagtgctcaaccttttttgcactgaaattagtagaacagattctagtggcttgaaacaat |
314 |
Q |
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| T |
34215021 |
tacatcatctctcactcttggaagcaacagaaacttgtagaagtgctcaaccttttttgcactgaaattagtagaacagattctagtggcttgaaacaat |
34215120 |
T |
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| Q |
315 |
agtagctttaacactttttaggtgcagtagcatataagaccttcacccaattttgcattgaggggatgtgtttaaat |
391 |
Q |
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| T |
34215121 |
agtagctttaacactttttaggtgcagtagcatataagaccttcacccaattttgcattgaggggatgtgtttaaat |
34215197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 11214114 - 11213960
Alignment:
| Q |
18 |
ggatccttgaactaaatgacccatattgactaacctatcagcacaacagataccttcgtggtaattattaaaagaaataacttgaac---------accg |
108 |
Q |
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| T |
11214114 |
ggattcttgaacaaaatgacccatattggccaacctctcagcacaacagttaccttcgcggtaaatgttaaaagaaataacttgaacaccaatattaccg |
11214015 |
T |
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| Q |
109 |
gtattatgccatctgtttcgaagcataattgggactaaagaagcatttctaaaaa |
163 |
Q |
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| T |
11214014 |
gcattatgccatctgtttcgaagcataattgggactaaagaagcatttcgaaaaa |
11213960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 202 - 391
Target Start/End: Original strand, 10637662 - 10637852
Alignment:
| Q |
202 |
gttgattcttttttacatcatctctcactcttggaagcaacagaaacttgtagaagtgctcaaccttttttgcactgaaattagtagaacagattctagt |
301 |
Q |
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| T |
10637662 |
gttggttcttttttatatcatctctcactcttggaagcaacacaagcttgtagaagcgctcagccttttttgcaccgaaattagaagcaaaaatcctagt |
10637761 |
T |
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| Q |
302 |
ggcttgaaacaatagtagcttt-----aacactttttaggtgcagtagcatataagaccttcacccaattttgcattgaggggatgtgtttaaat |
391 |
Q |
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| T |
10637762 |
ggcttgaaacaa----agcatttggagaccacttttgaggttcagtaagatataagacctcctcccaattttgcatcgaagggatgtgtttaaat |
10637852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 16043920 - 16043970
Alignment:
| Q |
112 |
ttatgccatctgtttcgaagcataattgggactaaagaagcatttctaaaaa |
163 |
Q |
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| T |
16043920 |
ttatgccatctgtttcgaagcataa-tccgactaaagaagcatttctaaaaa |
16043970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 39970236 - 39970160
Alignment:
| Q |
110 |
tattatgccatctgtttcgaagcataattgggactaaagaagcatttctaaaaatcatgagagcactagttgagtcg |
186 |
Q |
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| T |
39970236 |
tattatgctatttgtttcgaagcaccatagggactaaagaggagtttttaaatatcattagagcacttgttgagtcg |
39970160 |
T |
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