View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15405_high_2 (Length: 330)

Name: NF15405_high_2
Description: NF15405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15405_high_2
NF15405_high_2
[»] chr4 (9 HSPs)
chr4 (3-314)||(35098070-35098381)
chr4 (61-314)||(35097781-35098034)
chr4 (91-314)||(35072678-35072901)
chr4 (90-314)||(35106959-35107183)
chr4 (89-314)||(36296449-36296674)
chr4 (96-314)||(36940478-36940696)
chr4 (98-314)||(36961328-36961545)
chr4 (95-210)||(36935859-36935975)
chr4 (172-218)||(36953720-36953766)
[»] chr6 (2 HSPs)
chr6 (91-314)||(24014177-24014400)
chr6 (90-314)||(24040733-24040957)
[»] chr5 (1 HSPs)
chr5 (97-240)||(34919131-34919274)
[»] chr1 (1 HSPs)
chr1 (261-314)||(3123172-3123225)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 3 - 314
Target Start/End: Complemental strand, 35098381 - 35098070
Alignment:
Q  3 cacagacaaaaggtaagcattacaaccaacactctcaaggacgcaaataatttttaagcaacataataacagacagaactcattataagttcaaccagag 102  Q
    |||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098381 cacacacaaaaggtaagcattacaaccaacactctgaaggacgcgaataatttttaagcaacataataacagacagaactcattataagttcaaccagag 35098282  T
Q  103 atttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtccattttcg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098281 atttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtccattttcg 35098182  T
Q  203 cattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattcctctctcc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098181 cattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattcctctctcc 35098082  T
Q  303 gcttatctgaag 314  Q
    ||||||||||||    
T  35098081 gcttatctgaag 35098070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 61 - 314
Target Start/End: Complemental strand, 35098034 - 35097781
Alignment:
Q  61 caacataataacagacagaactcattataagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtga 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35098034 caacataataacagacagaactcattataagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtga 35097935  T
Q  161 gaacaccattctccattgcagctttcacttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatg 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35097934 gaacaccattctccattgcagctttcacttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatg 35097835  T
Q  261 ccattgatcgttcttatcttctttctcaacattcctctctccgcttatctgaag 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35097834 ccattgatcgttcttatcttctttctcaacattcctctctccgcttatctgaag 35097781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 91 - 314
Target Start/End: Original strand, 35072678 - 35072901
Alignment:
Q  91 gttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt 190  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35072678 gttcaaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt 35072777  T
Q  191 ggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaac 290  Q
    | ||||||||||||||||| ||  |||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||     
T  35072778 gatccattttcgcattctctggttatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaat 35072877  T
Q  291 attcctctctccgcttatctgaag 314  Q
     |||||||| ||||||||||||||    
T  35072878 gttcctctcaccgcttatctgaag 35072901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 90 - 314
Target Start/End: Complemental strand, 35107183 - 35106959
Alignment:
Q  90 agttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcact 189  Q
    |||| ||||||||||||||||||  || || |||||||||||||||||||| || || ||||| |||| |||||||||||||||||| ||||||||||||    
T  35107183 agtttaaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagcgagaacaccattctccatagcagctttcact 35107084  T
Q  190 tggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaa 289  Q
    || ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  35107083 tgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaa 35106984  T
Q  290 cattcctctctccgcttatctgaag 314  Q
      |||||||| ||||||||||||||    
T  35106983 agttcctctcaccgcttatctgaag 35106959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 89 - 314
Target Start/End: Original strand, 36296449 - 36296674
Alignment:
Q  89 aagttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcac 188  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| |  ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36296449 aagttcaaccagagatctcaatagacttaacatcaggtttcttaacttcttcttttggaacagttacagtgagaacaccattctccattgcagctttcac 36296548  T
Q  189 ttggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctca 288  Q
     || ||||| || ||||| || |||||||||||||||||||| || || ||||||||||||||||| ||||||||||| | |||||| ||||||||||||    
T  36296549 ctgatccatcttggcattttcgggcaatctgaacctcctcataaactttccactgctacgctccacgcgatgccattggttgttcttgtcttctttctca 36296648  T
Q  289 acattcctctctccgcttatctgaag 314  Q
    || ||||||||||| || ||||||||    
T  36296649 acgttcctctctccactaatctgaag 36296674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 96 - 314
Target Start/End: Original strand, 36940478 - 36940696
Alignment:
Q  96 accagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtcc 195  Q
    ||||||||| |||||||  ||||| ||| | ||||||||||||| ||| || ||||| ||||||||||  |||||||||||||||||||||| ||| |||    
T  36940478 accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatcc 36940577  T
Q  196 attttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattcc 295  Q
    ||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||  | |    
T  36940578 attttagcattctcaggcaatcttaatctcctcatgaacttcccactgctacgctccacgggatgccattgatcgttcttatcttctttctcaacgcttc 36940677  T
Q  296 tctctccgcttatctgaag 314  Q
    | | ||| |||||||||||    
T  36940678 tttttccacttatctgaag 36940696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 98 - 314
Target Start/End: Complemental strand, 36961545 - 36961328
Alignment:
Q  98 cagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgca-gctttcacttggtcca 196  Q
    ||||||| ||||||| ||||||  |||| || || |  ||||| || |||| ||| |||||||||||||||||||||  ||   || ||||| || ||||    
T  36961545 cagagatatcaatggtcttaactccaggttttttcacttcttccttaggaatagttacagtgagaacaccattctcccatgtttgcattcacctgatcca 36961446  T
Q  197 ttttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaacattcct 296  Q
    | || |||||||| | |||||| ||| ||||||||||||||||||||||| ||||||| | |||||||| || |||||||||||||||||||||  | ||    
T  36961445 tcttagcattctctgccaatctaaacttcctcatgaatttcccactgctaagctccacgcaatgccattcattgttcttatcttctttctcaacgcttct 36961346  T
Q  297 ctctccgcttatctgaag 314  Q
    ||||||||| ||||||||    
T  36961345 ctctccgctgatctgaag 36961328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 36935859 - 36935975
Alignment:
Q  95 aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctcc-attgcagctttcacttggt 193  Q
    |||||||||| ||||||| ||| || ||||||||||| | |||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||| |    
T  36935859 aaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttgat 36935958  T
Q  194 ccattttcgcattctca 210  Q
    ||||||| |||||||||    
T  36935959 ccattttagcattctca 36935975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 36953720 - 36953766
Alignment:
Q  172 tccattgcagctttcacttggtccattttcgcattctcaggcaatct 218  Q
    |||||||||||||||||||| ||| |||| ||||| |||||||||||    
T  36953720 tccattgcagctttcacttgatccgttttagcattgtcaggcaatct 36953766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 168; Significance: 5e-90; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 91 - 314
Target Start/End: Original strand, 24014177 - 24014400
Alignment:
Q  91 gttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt 190  Q
    ||||||||||||||||| ||||||||||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24014177 gttcaaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcactt 24014276  T
Q  191 ggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaac 290  Q
    | |||||||||||||| || ||||| ||||| ||||||||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24014277 gatccattttcgcattttcgggcaacctgaatctcctcatgaactttccgctgctgcgctccacacgatgccattgatcgttcttatcttctttctcaac 24014376  T
Q  291 attcctctctccgcttatctgaag 314  Q
    ||||||||||||||||||||||||    
T  24014377 attcctctctccgcttatctgaag 24014400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 90 - 314
Target Start/End: Original strand, 24040733 - 24040957
Alignment:
Q  90 agttcaaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcact 189  Q
    |||| |||||||||| ||||||| ||| || | ||||||||| |  ||||| || || ||||| |||||||||| |||||||||||||||||||||||||    
T  24040733 agtttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcact 24040832  T
Q  190 tggtccattttcgcattctcaggcaatctgaacctcctcatgaatttcccactgctacgctccacacgatgccattgatcgttcttatcttctttctcaa 289  Q
    || ||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||    
T  24040833 tgatccattttcgcattctctggtaatctaaacctcctcatgaattttccactgctacgctccacacgatgccattgatcattcttatcttctttttcaa 24040932  T
Q  290 cattcctctctccgcttatctgaag 314  Q
    | |||||||| ||||||||||||||    
T  24040933 cgttcctctcaccgcttatctgaag 24040957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 240
Target Start/End: Complemental strand, 34919274 - 34919131
Alignment:
Q  97 ccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtcca 196  Q
    ||||| |||||||| |||||||| |||  ||||||    ||||| || |||||||||||||| ||||| |||||||||||  ||||||| || || ||||    
T  34919274 ccagaaatttcaatagacttaacctcactcttcttctcttcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatcca 34919175  T
Q  197 ttttcgcattctcaggcaatctgaacctcctcatgaatttccca 240  Q
    ||||  ||||||||||||| || ||||||||||| || ||||||    
T  34919174 ttttaacattctcaggcaacctaaacctcctcataaacttccca 34919131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 3123225 - 3123172
Alignment:
Q  261 ccattgatcgttcttatcttctttctcaacattcctctctccgcttatctgaag 314  Q
    |||| |||||||||| ||||||||||||||  |||| |||||||||||||||||    
T  3123225 ccatcgatcgttcttgtcttctttctcaacggtcctttctccgcttatctgaag 3123172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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