View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15406_high_1 (Length: 595)
Name: NF15406_high_1
Description: NF15406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15406_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 523; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Complemental strand, 43092432 - 43091866
Alignment:
| Q |
18 |
taaacaatttcaattgtattgactattctcttgtttttgtaactgcagtagaagaacccaattttctcttgtaatcctacttttgggtgttggaattgca |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43092432 |
taaacaatttcaattgtattgactgttctcttgtttttgtaaatgcagtagaagaacccaattttctcttgtaatcctacttttgggtgttggaattgca |
43092333 |
T |
|
| Q |
118 |
acaatcactgatttacaactcaatgcgttgggctctttcttgtcttttctggcagtgataacaacgtgtgttgctcaaattgtatccttaaagaaaattt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
43092332 |
acaatcactgatttacaactcaatgcgttgggctctttcttgtcttttctggcagtgataacaacatgtgttgctcaaattgtatccttaaagaaaattt |
43092233 |
T |
|
| Q |
218 |
cactcctgttaactgctctgatttttaaaatggccgatattttatcagttgtgctttcgtgtgtgtgcagtgatgttcaatcttatgaaattatttttaa |
317 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43092232 |
cactcctgttaactgctatggtttttaaaatggccgatattttgtcagttgtgttttcgtgtgtgtgcagtgatgttcaatcttatgaatttatttttaa |
43092133 |
T |
|
| Q |
318 |
cgatgaatatgttgctaacaacacagggaaaagtgttacataaatgcatattcttattcctataaatttgttcttgggataatcatttcaccaacttcat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
43092132 |
cgatgaatatgttgctaacaacacagggaaaagtgttacataaatgcatattcttattcctataaatttgttcttgagataatcatttcgccaacttcat |
43092033 |
T |
|
| Q |
418 |
aacaacaaacattttatctaagcttccctttgtatgtgagatgacaaatatcttctacattaatgcaacttatattttctcttattatggaaaagtaaaa |
517 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43092032 |
aacaacaaacattttacctaagcttccctttgtatgtgagatgacaaatatcttctacattaatgcaacttatattttctcttattatggaaaagtaaaa |
43091933 |
T |
|
| Q |
518 |
ttctgcaaactttacatgtcttatattatctccagttttatgtaaaagtttgcatgcatatattcat |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43091932 |
ttctgcaaactttacatgtcttatattatctccagttttatgtaaaagtttgcatgcatatattcat |
43091866 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 101 - 209
Target Start/End: Complemental strand, 43084811 - 43084703
Alignment:
| Q |
101 |
tgggtgttggaattgcaacaatcactgatttacaactcaatgcgttgggctctttcttgtcttttctggcagtgataacaacgtgtgttgctcaaattgt |
200 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| || | ||||| |||| |||||||| ||| ||||||| ||||| ||||| ||||||||||| ||||| |
|
|
| T |
43084811 |
tgggtgttggaattgcaacagtcacagatttgcagttgaatgctctgggatctttcttatctcttctggcggtgattacaacatgtgttgctcagattgt |
43084712 |
T |
|
| Q |
201 |
atccttaaa |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
43084711 |
atccttaaa |
43084703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University