View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15406_high_6 (Length: 271)

Name: NF15406_high_6
Description: NF15406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15406_high_6
NF15406_high_6
[»] chr2 (21 HSPs)
chr2 (72-209)||(19109517-19109655)
chr2 (72-167)||(34818030-34818126)
chr2 (83-184)||(8389180-8389281)
chr2 (79-206)||(3958370-3958496)
chr2 (79-154)||(33440057-33440132)
chr2 (79-141)||(11457444-11457506)
chr2 (79-141)||(45294165-45294227)
chr2 (79-147)||(13704393-13704461)
chr2 (86-150)||(2765022-2765086)
chr2 (83-154)||(27899632-27899703)
chr2 (82-159)||(33451997-33452074)
chr2 (82-159)||(36948661-36948738)
chr2 (101-141)||(37772887-37772927)
chr2 (79-154)||(17766637-17766712)
chr2 (84-159)||(25217311-25217386)
chr2 (79-154)||(42479244-42479319)
chr2 (82-152)||(42894919-42894989)
chr2 (82-159)||(17474330-17474407)
chr2 (82-151)||(45153448-45153517)
chr2 (89-137)||(16242354-16242402)
chr2 (83-159)||(39447690-39447766)
[»] chr3 (18 HSPs)
chr3 (79-208)||(14828411-14828540)
chr3 (79-206)||(29048857-29048984)
chr3 (79-188)||(46625266-46625375)
chr3 (79-163)||(51493337-51493421)
chr3 (84-150)||(26465297-26465363)
chr3 (79-150)||(9164091-9164162)
chr3 (74-151)||(38530737-38530814)
chr3 (79-154)||(51816732-51816807)
chr3 (82-159)||(2358155-2358232)
chr3 (83-159)||(3938728-3938804)
chr3 (81-164)||(29036349-29036432)
chr3 (82-151)||(47739486-47739555)
chr3 (83-150)||(40062919-40062984)
chr3 (125-164)||(43419687-43419726)
chr3 (79-150)||(50384023-50384094)
chr3 (82-151)||(8657665-8657734)
chr3 (72-113)||(27143128-27143169)
chr3 (79-156)||(33841896-33841973)
[»] chr1 (15 HSPs)
chr1 (79-188)||(25563011-25563120)
chr1 (79-188)||(24472341-24472450)
chr1 (79-206)||(8704024-8704151)
chr1 (79-188)||(11844747-11844856)
chr1 (79-154)||(891057-891132)
chr1 (72-136)||(5210164-5210228)
chr1 (79-133)||(9445730-9445784)
chr1 (82-154)||(18583091-18583163)
chr1 (82-159)||(32817348-32817425)
chr1 (82-163)||(34006807-34006888)
chr1 (79-151)||(800419-800491)
chr1 (85-159)||(23443276-23443350)
chr1 (81-150)||(6099503-6099572)
chr1 (82-151)||(32542754-32542823)
chr1 (82-159)||(44937831-44937908)
[»] chr7 (18 HSPs)
chr7 (72-188)||(36945817-36945933)
chr7 (79-163)||(31985079-31985163)
chr7 (79-209)||(6466634-6466764)
chr7 (79-186)||(5278635-5278743)
chr7 (79-154)||(8195773-8195848)
chr7 (79-154)||(30861610-30861685)
chr7 (79-186)||(43186306-43186419)
chr7 (79-154)||(37398451-37398526)
chr7 (86-135)||(25612682-25612731)
chr7 (82-159)||(47203027-47203104)
chr7 (82-151)||(8155438-8155507)
chr7 (82-159)||(37517804-37517881)
chr7 (82-154)||(6467849-6467921)
chr7 (79-149)||(2816627-2816697)
chr7 (82-159)||(18951407-18951484)
chr7 (82-159)||(31643587-31643664)
chr7 (82-154)||(3304292-3304364)
chr7 (79-159)||(19225139-19225219)
[»] chr8 (17 HSPs)
chr8 (79-201)||(36981097-36981219)
chr8 (79-185)||(36318331-36318437)
chr8 (79-169)||(7982052-7982142)
chr8 (79-154)||(36407249-36407324)
chr8 (79-151)||(10840292-10840364)
chr8 (82-188)||(21594322-21594428)
chr8 (79-166)||(4259219-4259307)
chr8 (79-154)||(33472551-33472626)
chr8 (79-159)||(9074068-9074148)
chr8 (120-166)||(28423989-28424035)
chr8 (82-159)||(8884992-8885069)
chr8 (79-150)||(8621300-8621371)
chr8 (79-154)||(28218780-28218854)
chr8 (82-149)||(34645909-34645976)
chr8 (82-159)||(11697859-11697936)
chr8 (82-159)||(21004859-21004936)
chr8 (82-151)||(42280449-42280518)
[»] chr4 (25 HSPs)
chr4 (79-206)||(4936221-4936348)
chr4 (79-203)||(14473727-14473851)
chr4 (79-197)||(47784510-47784628)
chr4 (79-163)||(49001095-49001179)
chr4 (79-209)||(37222517-37222646)
chr4 (79-154)||(7794082-7794157)
chr4 (79-154)||(13509622-13509697)
chr4 (72-156)||(32601374-32601455)
chr4 (79-157)||(41322642-41322722)
chr4 (79-159)||(7932150-7932230)
chr4 (84-159)||(25490924-25490999)
chr4 (79-133)||(7817259-7817313)
chr4 (79-137)||(27880050-27880108)
chr4 (79-188)||(372378-372486)
chr4 (82-159)||(17932679-17932756)
chr4 (82-159)||(41412756-41412833)
chr4 (82-153)||(6228363-6228434)
chr4 (82-149)||(46439835-46439902)
chr4 (79-154)||(48095404-48095479)
chr4 (82-151)||(25751997-25752066)
chr4 (82-159)||(27631909-27631986)
chr4 (82-159)||(34973409-34973486)
chr4 (82-159)||(53893560-53893637)
chr4 (79-159)||(2505570-2505650)
chr4 (82-154)||(47874267-47874339)
[»] scaffold0003 (1 HSPs)
scaffold0003 (79-206)||(420951-421078)
[»] chr5 (14 HSPs)
chr5 (72-161)||(5456537-5456626)
chr5 (79-154)||(11185730-11185805)
chr5 (79-154)||(8738795-8738870)
chr5 (79-156)||(6800491-6800568)
chr5 (79-151)||(31928674-31928746)
chr5 (79-154)||(16429503-16429578)
chr5 (82-159)||(31220879-31220956)
chr5 (82-154)||(7884704-7884776)
chr5 (79-154)||(28624137-28624211)
chr5 (125-207)||(21070899-21070981)
chr5 (79-133)||(28445055-28445109)
chr5 (82-187)||(32841487-32841592)
chr5 (82-159)||(38692334-38692411)
chr5 (86-150)||(9439226-9439290)
[»] chr6 (8 HSPs)
chr6 (79-157)||(13799079-13799157)
chr6 (79-188)||(4655370-4655479)
chr6 (79-147)||(14037523-14037591)
chr6 (82-206)||(32044762-32044885)
chr6 (72-154)||(17264951-17265033)
chr6 (82-163)||(9905603-9905684)
chr6 (82-159)||(13096706-13096783)
chr6 (83-154)||(34528974-34529048)
[»] scaffold0018 (1 HSPs)
scaffold0018 (82-151)||(173910-173979)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 4e-56; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 72 - 209
Target Start/End: Complemental strand, 19109655 - 19109517
Alignment:
Q  72 aaaacataattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgt 171  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  19109655 aaaatataattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatattttggattataaaatccgaattagtgaaaaatcatgt 19109556  T
Q  172 caaattttaaaatccg-agaacctcatgggcattttcgt 209  Q
    | |||||||||||||| | ||||||||||||||||||||    
T  19109555 cgaattttaaaatccgaaaaacctcatgggcattttcgt 19109517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 167
Target Start/End: Original strand, 34818030 - 34818126
Alignment:
Q  72 aaaacataattcaaaa-ctgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatc 167  Q
    |||||| ||||||||| ||||| |||||  ||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||    
T  34818030 aaaacaaaattcaaaaactgctaaaatgatagagattctgattgctgattatacatacgcatatttcggattataaaatccgaattagtgaaaaatc 34818126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 8389180 - 8389281
Alignment:
Q  83 caaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattttaaa 182  Q
    ||||||||||||||||  ||||||| ||||||| |||||||||||| |||| ||| ||| ||||||||||||||||||||| || |  || |||||||||    
T  8389180 caaaactgctgaaatgtgagagattatgattgctgattatacataaacatagttcagattataaaatccgaattagtgaaacatgaattcgaattttaaa 8389279  T
Q  183 at 184  Q
    ||    
T  8389280 at 8389281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 3958496 - 3958370
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    ||||||||||||||||||||  ||||||| |||||||  |  ||| ||||||| ||||| ||| |||||||||||||||||||||||| || ||  ||||    
T  3958496 aattcaaaactgctgaaatgagagagattttgattgctaaa-atatataagcacatttcagattataaaatccgaattagtgaaaaattatttcggattt 3958398  T
Q  179 taaaatccgagaacctcatgggcatttt 206  Q
    ||||||||||   ||||||| |||||||    
T  3958397 taaaatccgaattcctcatgagcatttt 3958370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 33440132 - 33440057
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||||||||||||| | ||||||| ||||||| |||||||||||||||||||| |||| ||||||| ||||    
T  33440132 aattcaaaactgctgaaataggagagattttgattgccgattatacataagcatattttggattataaaattcgaa 33440057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 11457444 - 11457506
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggat 141  Q
    |||||||||||||| |||||||||||||||| ||||| ||||||| |||| ||||||||||||    
T  11457444 aattcaaaactgctaaaatggaagagattctaattgctgattatatataaacatatttcggat 11457506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 45294165 - 45294227
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggat 141  Q
    |||| |||||||||||||||| ||||||||||||||  ||||||||||| |||||||||||||    
T  45294165 aatttaaaactgctgaaatgggagagattctgattgttgattatacatatgcatatttcggat 45294227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 13704461 - 13704393
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaa 147  Q
    ||||||||||||||||||| ||| ||||||||||||| ||||||| |||| ||||||| |||| |||||    
T  13704461 aattcaaaactgctgaaatagaaaagattctgattgctgattatatataaacatattttggattataaa 13704393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 2765022 - 2765086
Alignment:
Q  86 aactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatc 150  Q
    |||||||||||||  |||||||||||||| || ||||| ||||||||||||||||| ||| ||||    
T  2765022 aactgctgaaatgagagagattctgattgtggcttatatataagcatatttcggattatataatc 2765086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 27899703 - 27899632
Alignment:
Q  83 caaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||||||||||  ||| ||||||||| |  ||||||||||||||||||| |||| ||||||| ||||    
T  27899703 caaaactgctgaaatgagagatattctgatttctaattatacataagcatattttggattataaaatacgaa 27899632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 33452074 - 33451997
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  33452074 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattataaaatccgaaatagt 33451997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 36948738 - 36948661
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    ||||||||| |||||||  |||||||||||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  36948738 tcaaaactgttgaaatgtgagagattctgatggctgattatacataagaattgtccggattataaaatccgaaatagt 36948661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 141
Target Start/End: Complemental strand, 37772927 - 37772887
Alignment:
Q  101 agagattctgattgcggattatacataagcatatttcggat 141  Q
    ||||||||||||||| |||||| ||||||||||||||||||    
T  37772927 agagattctgattgctgattatgcataagcatatttcggat 37772887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 17766712 - 17766637
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||| || ||||| || ||||||| |||  || ||||||||||||||||| ||||||| || |||||||||    
T  17766712 aattcaaaattgttgaaaggggagagattatgacagctgattatacataagcatagttcggattatgaaatccgaa 17766637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 25217386 - 25217311
Alignment:
Q  84 aaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||  ||||| |||||| || ||||| ||||||| ||  ||||||| |||||||||||| ||||    
T  25217386 aaaactgctgaaatgtgagagaatctgatggctgattacacataagaattgttcggattataaaatccgaaatagt 25217311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 42479244 - 42479319
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    |||||||||||||||||||  |||| ||| | ||||| ||||||| |||||||||||||  || ||| ||||||||    
T  42479244 aattcaaaactgctgaaataaaagatattttaattgctgattatatataagcatatttcacattatataatccgaa 42479319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 42894919 - 42894989
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccg 152  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||| ||  | ||||| ||||||||||    
T  42894919 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattataaaatccg 42894989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 17474407 - 17474330
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  ||||| |||||| || ||||||||| ||| ||  ||||||| |||||||| ||| ||||    
T  17474407 tcaaaactgctgaaatgtgagagagtctgatggctgattatacacaagaattgttcggattataaaatctgaaatagt 17474330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 45153517 - 45153448
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatcc 151  Q
    |||||||| ||||||||  ||||| |||||| || ||||||||||||| ||  ||||||| |||||||||    
T  45153517 tcaaaactactgaaatgtgagagagtctgatggctgattatacataagaattgttcggattataaaatcc 45153448  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 137
Target Start/End: Complemental strand, 16242402 - 16242354
Alignment:
Q  89 tgctgaaatggaagagattctgattgcggattatacataagcatatttc 137  Q
    |||||||||||||||||||||| |||  | ||||| |||||||||||||    
T  16242402 tgctgaaatggaagagattctggttgttgcttataaataagcatatttc 16242354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 39447690 - 39447766
Alignment:
Q  83 caaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||| |||||||  ||||| ||||||  | ||||||||||||| ||  ||||||| |||||||||||| ||||    
T  39447690 caaaactgttgaaatgtgagagactctgatgactgattatacataagaattgttcggattataaaatccgaaatagt 39447766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 9e-39; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 14828540 - 14828411
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||| |||||||||||||| || || |||||    
T  14828540 aattcaaaactgctgaaatgggagagattctgattgctgattatacataaacatatttcggattataaaatccaaattagtgaaaaatgatttcgaattt 14828441  T
Q  179 taaaatccgagaacctcatgggcattttcg 208  Q
    || ||| ||| ||||||| |||||||||||    
T  14828440 tataattcgaaaacctcaggggcattttcg 14828411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 79 - 206
Target Start/End: Original strand, 29048857 - 29048984
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    |||||||||||| |||||||  ||||||| ||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||  ||||    
T  29048857 aattcaaaactgttgaaatgagagagattttgattgctgattatacataagcatatttcagattataaaatccgaattagtgaaaaatcatttcggattt 29048956  T
Q  179 taaaatccgagaacctcatgggcatttt 206  Q
    ||||||| || ||| |||||| ||||||    
T  29048957 taaaatctgaaaacttcatggacatttt 29048984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 46625266 - 46625375
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    |||||||||||| |||||| | ||||||||||||||| ||||||| ||||| ||||||||||| ||||||| ||||||| ||||||||||| ||| ||||    
T  46625266 aattcaaaactgatgaaattggagagattctgattgctgattatagataagtatatttcggattataaaattcgaattattgaaaaatcatttcagattt 46625365  T
Q  179 taaaatccga 188  Q
    ||||||||||    
T  46625366 taaaatccga 46625375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 51493337 - 51493421
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaa 163  Q
    |||||||||||||| |||||  |||||| |||||||  ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  51493337 aattcaaaactgctaaaatgtgagagatcctgattgatgattatacataagcatagttcggattataaaatccgaattagtgaaa 51493421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 84 - 150
Target Start/End: Original strand, 26465297 - 26465363
Alignment:
Q  84 aaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatc 150  Q
    |||||||||||||||| ||||||||||||||| |||| |||||||||||||||| ||| ||||||||    
T  26465297 aaaactgctgaaatgggagagattctgattgctgattttacataagcatatttcagattataaaatc 26465363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 150
Target Start/End: Original strand, 9164091 - 9164162
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatc 150  Q
    ||||||||||||||||||||| ||| ||| ||||||| |||||||||||| ||||||| |||| ||||||||    
T  9164091 aattcaaaactgctgaaatgggagatattatgattgctgattatacataaacatatttaggattataaaatc 9164162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 74 - 151
Target Start/End: Original strand, 38530737 - 38530814
Alignment:
Q  74 aacataattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatcc 151  Q
    |||| ||||||||||| ||||||||  ||||||||||||| | |||||||| ||||||||||| |||| |||||||||    
T  38530737 aacaaaattcaaaactactgaaatgacagagattctgatttctgattatacgtaagcatattttggattataaaatcc 38530814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 51816732 - 51816807
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    |||| ||||||| |||||| | ||||||| ||||||| ||| |||||||| |||||||||||| ||||||||||||    
T  51816732 aatttaaaactgttgaaataggagagattttgattgctgatcatacataatcatatttcggattataaaatccgaa 51816807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 2358232 - 2358155
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  |||||||||||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  2358232 tcaaaactgctgaaatgtgagagattctgatggctgattatacataagaattgtccggattataaaatccgaaatagt 2358155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 83 - 159
Target Start/End: Original strand, 3938728 - 3938804
Alignment:
Q  83 caaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    ||||||||||||||||  |||||||||||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  3938728 caaaactgctgaaatgtgagagattctgatggctgattatacataagaattgtccggattataaaatccgaaatagt 3938804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 29036349 - 29036432
Alignment:
Q  81 ttcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaa 164  Q
    |||||||||| |||||||||| ||||  ||||||  | |||||  |||||||||||||||| ||| |||||||| |||||||||    
T  29036349 ttcaaaactgttgaaatggaaaagatgttgattgttgcttatatgtaagcatatttcggattatagaatccgaaatagtgaaaa 29036432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 47739555 - 47739486
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatcc 151  Q
    |||||||||||||||||  ||||| ||||||||| ||||||||||||| ||  | ||||| |||||||||    
T  47739555 tcaaaactgctgaaatgtgagagagtctgattgctgattatacataagaattgtccggattataaaatcc 47739486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 40062919 - 40062984
Alignment:
Q  83 caaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatc 150  Q
    |||||||||| |||||| |||||||| |||||| |||||||  ||| |||||||||||| ||||||||    
T  40062919 caaaactgctaaaatgggagagattcggattgctgattata--taaacatatttcggattataaaatc 40062984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 164
Target Start/End: Complemental strand, 43419726 - 43419687
Alignment:
Q  125 ataagcatatttcggatcataaaatccgaattagtgaaaa 164  Q
    ||||||||||||||||| ||| ||||||||||||||||||    
T  43419726 ataagcatatttcggattatataatccgaattagtgaaaa 43419687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 50384094 - 50384023
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatc 150  Q
    ||||||||||||||||||| | ||| ||| |||||   ||||||| ||||||||||||| ||| ||||||||    
T  50384094 aattcaaaactgctgaaattggagaaattttgattcttgattatatataagcatatttcagattataaaatc 50384023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 8657665 - 8657734
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatcc 151  Q
    |||||||||||||||||  |||||||||||| || |||||||||| || ||  | ||||| |||||||||    
T  8657665 tcaaaactgctgaaatgtgagagattctgatggctgattatacatgagaattgtccggattataaaatcc 8657734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 27143169 - 27143128
Alignment:
Q  72 aaaacataattcaaaactgctgaaatggaagagattctgatt 113  Q
    |||||| ||||||||||||||||||||| ||||||| |||||    
T  27143169 aaaacaaaattcaaaactgctgaaatgggagagattttgatt 27143128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 33841973 - 33841896
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaatt 156  Q
    ||||||||| ||||||||||| | | |||  |||||  ||||||||||||||||| || |||| || |||||||||||    
T  33841973 aattcaaaattgctgaaatgggacaaattaagattgttgattatacataagcatagtttggattatgaaatccgaatt 33841896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 25563120 - 25563011
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    ||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |   ||||    
T  25563120 aattcaaaactgctgaaatggcagagattctgattgatgattatacataagcatatttcggattataaaatccgaattagtgaaaaatcatttttgattt 25563021  T
Q  179 taaaatccga 188  Q
    ||||||||||    
T  25563020 taaaatccga 25563011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 24472450 - 24472341
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    |||| ||||| |||||||||  ||||||||||||| | ||||||||||||||||| ||||||| |||||||||||||||||||||||| |  ||  ||||    
T  24472450 aatttaaaacggctgaaatgtgagagattctgatttctgattatacataagcatagttcggattataaaatccgaattagtgaaaaatgaattcggattt 24472351  T
Q  179 taaaatccga 188  Q
    ||||||||||    
T  24472350 taaaatccga 24472341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 8704151 - 8704024
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    ||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||||||| ||  |  ||| ||||||||||||||||||| |   ||||    
T  8704151 aattcaaaattgctgaaatgggagagattttgattgctgattatacataagcatatttcgaattttgtaattcgaattagtgaaaaatcattttggattt 8704052  T
Q  179 taaaatccgagaacctcatgggcatttt 206  Q
    ||||||||||    ||||||||||||||    
T  8704051 taaaatccgaattactcatgggcatttt 8704024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 11844747 - 11844856
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    |||||| || ||| ||||||||||||||||||||||| ||||||||||||||||||||| |||  || |||||||||||| ||||||| || |   ||||    
T  11844747 aattcataattgcggaaatggaagagattctgattgctgattatacataagcatatttcagattttataatccgaattagcgaaaaattattttggattt 11844846  T
Q  179 taaaatccga 188  Q
    ||||||||||    
T  11844847 taaaatccga 11844856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 891057 - 891132
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||||| ||||||| ||||||||||| ||||| |||||||| |||||||||||  ||| ||||||||||||    
T  891057 aattcaaaactactgaaattgaagagattctaattgctgattatacgtaagcatattttagattataaaatccgaa 891132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 5210228 - 5210164
Alignment:
Q  72 aaaacataattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatattt 136  Q
    |||||| ||||||||||||||||||||| ||||||| ||||||   |||||||||||||||||||    
T  5210228 aaaacaaaattcaaaactgctgaaatgggagagattttgattgtttattatacataagcatattt 5210164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 9445784 - 9445730
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcata 133  Q
    ||||||||| ||||||||||| ||||||| ||||||| |||||||||||||||||    
T  9445784 aattcaaaattgctgaaatgggagagattatgattgctgattatacataagcata 9445730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 18583163 - 18583091
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    |||||||| ||||||||  |||||||||||| || ||||||||||||| ||  ||||||| ||||||||||||    
T  18583163 tcaaaactactgaaatgtgagagattctgatggctgattatacataagaattgttcggattataaaatccgaa 18583091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 32817425 - 32817348
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  32817425 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattataaaatccgaaatagt 32817348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 34006807 - 34006888
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaa 163  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||  ||  | ||||| |||||||||||| ||||||||    
T  34006807 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataaaaattatccggattataaaatccgaaatagtgaaa 34006888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 800491 - 800419
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatcc 151  Q
    ||||||||| || | |||||| ||||||| ||||||| ||||||||||||||||| | ||||| || ||||||    
T  800491 aattcaaaattgttaaaatgggagagattatgattgctgattatacataagcatagtccggattatgaaatcc 800419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 23443276 - 23443350
Alignment:
Q  85 aaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    ||||||||||||||  ||||||| |||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  23443276 aaactgctgaaatgtgagagattgtgatggctgattatacataagaattgtccggattataaaatccgaaatagt 23443350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 150
Target Start/End: Complemental strand, 6099572 - 6099503
Alignment:
Q  81 ttcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatc 150  Q
    ||||||||||||||||||| ||||||  ||||||  | ||||| ||||||||||||| ||| ||| ||||    
T  6099572 ttcaaaactgctgaaatggtagagatgttgattgttgcttatatataagcatatttcagattatataatc 6099503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 32542754 - 32542823
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatcc 151  Q
    ||||||||||| |||||  |||||||||||| || ||||||||||||| ||  | ||||| |||||||||    
T  32542754 tcaaaactgcttaaatgtgagagattctgatggctgattatacataagaattgtccggattataaaatcc 32542823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 44937908 - 44937831
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||| ||||||||||||  ||||||||||||  | ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  44937908 tcaatactgctgaaatgtgagagattctgatgactgattatacataagaattgtccggattataaaatccgaaatagt 44937831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 72 - 188
Target Start/End: Complemental strand, 36945933 - 36945817
Alignment:
Q  72 aaaacataattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgt 171  Q
    |||||| ||||||||||| |||||||| |||||||| |||||||  |||||||||||||||||||| ||| ||||||||||||||||||||||||||| |    
T  36945933 aaaacaaaattcaaaactactgaaatgaaagagattttgattgctaattatacataagcatatttcagattataaaatccgaattagtgaaaaatcattt 36945834  T
Q  172 caaattttaaaatccga 188  Q
    || ||||||||||||||    
T  36945833 cagattttaaaatccga 36945817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 31985163 - 31985079
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaa 163  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  31985163 aattcaaaactgctgaaatgtaagagattctgattgctgattatacataagcatagttcggattataaaatccgaattagtgaaa 31985079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 6466764 - 6466634
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    |||| |||||||||  ||||  ||||||||||||||| |||||||||| ||||||||||| || |||||||| |||||||||||||||||| ||  | ||    
T  6466764 aatttaaaactgctacaatgagagagattctgattgctgattatacatgagcatatttcgaattataaaatctgaattagtgaaaaatcatttcggagtt 6466665  T
Q  179 taaaatccgagaacctcatgggcattttcgt 209  Q
    |||||||| | ||||||||||||||||||||    
T  6466664 taaaatccaaaaacctcatgggcattttcgt 6466634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 5278635 - 5278743
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataa-gcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaatt 177  Q
    |||||||||||||| ||||   ||||||| ||||||| |||||||||||| |||||||| |||| ||| ||||||||||||||||||||||| ||  |||    
T  5278635 aattcaaaactgcttaaatatgagagattttgattgctgattatacataaagcatattttggattatataatccgaattagtgaaaaatcatttcggatt 5278734  T
Q  178 ttaaaatcc 186  Q
    |||||||||    
T  5278735 ttaaaatcc 5278743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 8195848 - 8195773
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| || |||| || |||||||||    
T  8195848 aattcaaaattgctgaaatggaagagattatgattgctgattatacataagcatagtttggattatgaaatccgaa 8195773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 30861610 - 30861685
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||||| ||||||||  ||||||||||||||  |||||||||||||||||||||| || ||||||||||||    
T  30861610 aattcaaaactcctgaaatgtgagagattctgattgttgattatacataagcatatttcgaattataaaatccgaa 30861685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 186
Target Start/End: Original strand, 43186306 - 43186419
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcata------tttcggatcataaaatccgaattagtgaaaaatcatgtc 172  Q
    ||||||||| || |||||||  ||||||||||||||| |||||||||||| ||||      |||||||| ||||||| |||||||||||||||| || ||    
T  43186306 aattcaaaagtgttgaaatgagagagattctgattgctgattatacataaacataaacatatttcggattataaaattcgaattagtgaaaaatgatttc 43186405  T
Q  173 aaattttaaaatcc 186  Q
    | ||||||||||||    
T  43186406 agattttaaaatcc 43186419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 37398526 - 37398451
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    |||| ||||||||| |||| | ||||||||| ||||| ||||||| |||||||||||| |||| ||||||||||||    
T  37398526 aatttaaaactgctaaaataggagagattctaattgccgattatatataagcatattttggattataaaatccgaa 37398451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 25612731 - 25612682
Alignment:
Q  86 aactgctgaaatggaagagattctgattgcggattatacataagcatatt 135  Q
    |||||||||||||||||||||||||||||| | ||||| |||||||||||    
T  25612731 aactgctgaaatggaagagattctgattgctgcttataaataagcatatt 25612682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 47203027 - 47203104
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  |||||||||||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  47203027 tcaaaactgctgaaatgtgagagattctgatggctgattatacataagaattgtccggattataaaatccgaaatagt 47203104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 151
Target Start/End: Original strand, 8155438 - 8155507
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatcc 151  Q
    |||||||||||||||||  |||||||||||| || ||||||||||||| ||  | ||||| |||||||||    
T  8155438 tcaaaactgctgaaatgtgagagattctgatggctgattatacataagtattgtccggattataaaatcc 8155507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 37517881 - 37517804
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  ||||| ||||||||| ||||||||||||| ||  | | ||| |||||||||||| ||||    
T  37517881 tcaaaactgctgaaatgtgagagagtctgattgctgattatacataagaattgtccagattataaaatccgaaatagt 37517804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 6467921 - 6467849
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    |||||||||||||||||  ||||| ||||||  | ||||||||||||| ||  ||||||| ||||||||||||    
T  6467921 tcaaaactgctgaaatgtgagagagtctgatgactgattatacataagaattgttcggattataaaatccgaa 6467849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 2816697 - 2816627
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaat 149  Q
    ||||||||||| ||||||| ||||||||||| | ||  | ||||| ||||||||||||| ||| |||||||    
T  2816697 aattcaaaactactgaaattgaagagattctaaatgttgtttatatataagcatatttcagattataaaat 2816627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 18951484 - 18951407
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||  ||||||  |||||||||||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  18951484 tcaaaactggagaaatgtgagagattctgatggctgattatacataagaattgtccggattataaaatccgaaatagt 18951407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 31643587 - 31643664
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    ||||||||||||||||   |||||||||||| |  ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  31643587 tcaaaactgctgaaatatgagagattctgatggttgattatacataagaattgtccggattataaaatccgaaatagt 31643664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 154
Target Start/End: Complemental strand, 3304364 - 3304292
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    |||||||||| |||||   |||||||||||| || ||||||||||||| ||  | ||||| ||||||||||||    
T  3304364 tcaaaactgccgaaatatgagagattctgatggctgattatacataagaattatccggattataaaatccgaa 3304292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 19225219 - 19225139
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    ||||||||||||||||||||   |||| |||||| || ||||||||||||| ||  | | ||| |||||||||||| ||||    
T  19225219 aattcaaaactgctgaaatgtgggagagtctgatggctgattatacataagaattgtccagattataaaatccgaaatagt 19225139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 201
Target Start/End: Original strand, 36981097 - 36981219
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    |||| |||||||||||||||| | ||||| |||| || |||||||||||||||||||||| || ||||||||||||||||||||||||| | ||  ||||    
T  36981097 aattgaaaactgctgaaatgggatagattgtgatcgctgattatacataagcatatttcgaattataaaatccgaattagtgaaaaatcttttcggattt 36981196  T
Q  179 taaaatccgagaacctcatgggc 201  Q
    |||||||||| ||||||||||||    
T  36981197 taaaatccgaaaacctcatgggc 36981219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 79 - 185
Target Start/End: Original strand, 36318331 - 36318437
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    ||||||||||||||||||||  ||| |||||||||||  ||||||||||||| |||||| ||| |||| |||||||||||||||||||||| | | ||||    
T  36318331 aattcaaaactgctgaaatgagagaaattctgattgcttattatacataagcgtatttcagattataatatccgaattagtgaaaaatcattttagattt 36318430  T
Q  179 taaaatc 185  Q
    |||||||    
T  36318431 taaaatc 36318437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 7982052 - 7982142
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcat 169  Q
    |||||||||||||||||||| |||||||||| |||||  |||||||| ||| ||||||||||| |||||||| ||| ||||||||||||||    
T  7982052 aattcaaaactgctgaaatgaaagagattcttattgctaattatacagaagtatatttcggattataaaatctgaactagtgaaaaatcat 7982142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 36407324 - 36407249
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| |||| ||||||| ||||    
T  36407324 aattcaaaaatgctgaaatgggagagattctgattgctgattatacataagcatatttaggattataaaattcgaa 36407249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 10840364 - 10840292
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatcc 151  Q
    ||||||||||||||||||||  ||||| ||||||||  |||||||||||||||||||||| || |||||||||    
T  10840364 aattcaaaactgctgaaatgtgagagactctgattgttgattatacataagcatatttcgaattataaaatcc 10840292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 82 - 188
Target Start/End: Original strand, 21594322 - 21594428
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattttaa 181  Q
    |||||||||||||||||  ||||| | ||||||| |||||||| |||| || |||||||| |||||||||||| |||||||| || |  ||  |||||||    
T  21594322 tcaaaactgctgaaatgtgagagagtttgattgctgattatacgtaagaatttttcggattataaaatccgaaatagtgaaacatgaattcggattttaa 21594421  T
Q  182 aatccga 188  Q
    |||||||    
T  21594422 aatccga 21594428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 166
Target Start/End: Complemental strand, 4259307 - 4259219
Alignment:
Q  79 aattcaaaactgctgaaa-tggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaat 166  Q
    |||||||||||||||||| ||  ||| ||||||||||  ||||||||||||||||| ||| ||| |||||||| |||||| ||||||||    
T  4259307 aattcaaaactgctgaaaatgtgagatattctgattgttgattatacataagcatagttcagattataaaatctgaattaatgaaaaat 4259219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 33472551 - 33472626
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||| ||||||||||| ||||||| ||||||  ||||||||||||||||| || |||| || |||||||||    
T  33472551 aattcaaaattgctgaaatgggagagattatgattgttgattatacataagcatagtttggattatgaaatccgaa 33472626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 9074068 - 9074148
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    ||||||||||||||||||||  ||||| |||||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  9074068 aattcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattataaaatccgaaatagt 9074148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 166
Target Start/End: Original strand, 28423989 - 28424035
Alignment:
Q  120 tatacataagcatatttcggatcataaaatccgaattagtgaaaaat 166  Q
    ||||||||||||||||| |||| ||||||||| ||||||||||||||    
T  28423989 tatacataagcatattttggattataaaatccaaattagtgaaaaat 28424035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 8885069 - 8884992
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  8885069 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattataaaatccgaaatagt 8884992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 150
Target Start/End: Complemental strand, 8621371 - 8621300
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatc 150  Q
    |||||||||||||| |||||| ||| ||||| ||||   |||||||||||||||||||  ||| ||||||||    
T  8621371 aattcaaaactgctaaaatgggagaaattctaattgttcattatacataagcatatttaagattataaaatc 8621300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 28218854 - 28218780
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||||| ||||| ||  ||||||| ||||||| ||||||| |||||||||||| |||| ||| ||||||||    
T  28218854 aattcaaaactactgaa-tgagagagattttgattgctgattatatataagcatattttggattatataatccgaa 28218780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 34645909 - 34645976
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaat 149  Q
    |||||| ||||||||||| ||||||| ||||||| |||| ||||||| |||||||  ||| |||||||    
T  34645909 tcaaaattgctgaaatgggagagattttgattgctgattgtacataaacatattttagattataaaat 34645976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 11697936 - 11697859
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||| |   | ||||| |||||||||||| ||||    
T  11697936 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaactgtccggattataaaatccgaaatagt 11697859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 21004859 - 21004936
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  |||||||||||| |  ||||||||||||| ||  | ||||| ||||||| |||| ||||    
T  21004859 tcaaaactgctgaaatgtgagagattctgatggttgattatacataagaattgtccggattataaaattcgaaatagt 21004936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 42280518 - 42280449
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatcc 151  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||| ||  | ||||| |||||||||    
T  42280518 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattataaaatcc 42280449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 4936348 - 4936221
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    ||||||||||||||||||||| |||||||||||||||  ||| |||||||||||||||| ||| |||||||| ||||||||||||||| |  ||  ||||    
T  4936348 aattcaaaactgctgaaatgggagagattctgattgctaattttacataagcatatttctgattataaaatctgaattagtgaaaaatgaattcggattt 4936249  T
Q  179 taaaatccgagaacctcatgggcatttt 206  Q
    |||||| ||| ||||||| |||||||||    
T  4936248 taaaattcgaaaacctcaagggcatttt 4936221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 203
Target Start/End: Complemental strand, 14473851 - 14473727
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    ||||||||| || |||||||  | | ||| ||||| | ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||  ||||    
T  14473851 aattcaaaattgttgaaatgagacaaattttgattactgattaaacataagcatatttcggattataaaatccgaattagtgaaaaatcatttcggattt 14473752  T
Q  179 taaaatccgagaacctcatgggcat 203  Q
    |||||||| | ||||||||||||||    
T  14473751 taaaatccaaaaacctcatgggcat 14473727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 79 - 197
Target Start/End: Original strand, 47784510 - 47784628
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    ||||||||||||||| ||||  ||||||||||||||| ||||||| || |||||||||| ||| |||||||||||||| |||||||||||| ||  ||||    
T  47784510 aattcaaaactgctggaatgtgagagattctgattgctgattatatatgagcatatttccgattataaaatccgaatttgtgaaaaatcatttcggattt 47784609  T
Q  179 taaaatccgagaacctcat 197  Q
    ||||||  || ||||||||    
T  47784610 taaaatttgaaaacctcat 47784628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 79 - 163
Target Start/End: Complemental strand, 49001179 - 49001095
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaa 163  Q
    |||||||||||||| |||||   |||||||||||||  ||||||||||||||||| ||||||| |||||||||||||||||||||    
T  49001179 aattcaaaactgctcaaatgtgtgagattctgattgttgattatacataagcatagttcggattataaaatccgaattagtgaaa 49001095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 37222517 - 37222646
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    ||||||||| || |||||||  ||||||||||||||  ||||||| |||| ||||||||| || ||||||||  |||||||||||||| || ||  | ||    
T  37222517 aattcaaaattgttgaaatgagagagattctgattgtagattatagataaacatatttcgaattataaaatcacaattagtgaaaaattatttcgga-tt 37222615  T
Q  179 taaaatccgagaacctcatgggcattttcgt 209  Q
    |||||||| | ||||||||| ||||||||||    
T  37222616 taaaatcctaaaacctcatgagcattttcgt 37222646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 7794157 - 7794082
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||| ||||||||||||||||||| ||||||| ||||||| ||||||||| | ||||| || |||||||||    
T  7794157 aattcaaaattgctgaaatggaagagattatgattgctgattatagataagcatagtccggattatgaaatccgaa 7794082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 13509622 - 13509697
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    |||||||||||| |||||||||||||||| ||||||  ||||||| ||||||||||||| ||  ||| ||||||||    
T  13509622 aattcaaaactgttgaaatggaagagattttgattgttgattatatataagcatatttcagaatatataatccgaa 13509697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 32601374 - 32601455
Alignment:
Q  72 aaaacataattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaatt 156  Q
    |||||| ||||||||||||   |||||  ||||||| ||||||| |||||||||||||||||||||| || ||||||| ||||||    
T  32601374 aaaacaaaattcaaaactg---aaatgagagagattttgattgctgattatacataagcatatttcgaattataaaatacgaatt 32601455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 41322722 - 41322642
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggat--tatacataagcatatttcggatcataaaatccgaatta 157  Q
    |||||||||| | |||||||  ||||||||||||||| |||  |||||||||| ||| ||||||| |||||||||||||||    
T  41322722 aattcaaaacagatgaaatgtgagagattctgattgctgatattatacataagtatagttcggattataaaatccgaatta 41322642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 159
Target Start/End: Original strand, 7932150 - 7932230
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    ||||||||||||||||||||  ||||| ||||||  | ||||||||||||| ||  ||||||| |||||||||||| ||||    
T  7932150 aattcaaaactgctgaaatgtgagagagtctgatgactgattatacataagaattgttcggattataaaatccgaaatagt 7932230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 25490999 - 25490924
Alignment:
Q  84 aaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||  ||||| |||||| || ||||||||||||| ||  ||||||| |||||||||||| ||||    
T  25490999 aaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgttcggattataaaatccgaaatagt 25490924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 7817313 - 7817259
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcata 133  Q
    ||||||||| | ||||||||| ||||||| ||||||| |||||||||||||||||    
T  7817313 aattcaaaatttctgaaatgggagagattatgattgctgattatacataagcata 7817259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 27880050 - 27880108
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttc 137  Q
    ||||||||||| ||||||||| |||||||| ||||   |||||||||||||||||||||    
T  27880050 aattcaaaactactgaaatgggagagattcggattagtgattatacataagcatatttc 27880108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 372378 - 372486
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    |||| ||||||| |||||| | ||| ||||| || |  ||||||||||||||||||||||||| | |||||| |||||||| ||| || || ||  ||||    
T  372378 aatttaaaactgttgaaataggagatattcttatcgttgattatacataagcatatttcggatta-aaaatcggaattagtaaaatataatttcggattt 372476  T
Q  179 taaaatccga 188  Q
    ||||||||||    
T  372477 taaaatccga 372486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 17932756 - 17932679
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  17932756 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattataaaatccgaaatagt 17932679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 41412833 - 41412756
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||| ||||||||  |||||||||||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  41412833 tcaaaactactgaaatgtgagagattctgatggctgattatacataagaattgtccggattataaaatccgaaatagt 41412756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 153
Target Start/End: Complemental strand, 6228434 - 6228363
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccga 153  Q
    |||||||||||||||||  ||||||| |||| || ||||||||||||| ||  | ||||| |||||||||||    
T  6228434 tcaaaactgctgaaatgtgagagattatgatggctgattatacataagaattgtccggattataaaatccga 6228363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 149
Target Start/End: Complemental strand, 46439902 - 46439835
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaat 149  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||| || || ||||| |||||||    
T  46439902 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattttccggattataaaat 46439835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 48095479 - 48095404
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||||| ||  ||| | ||||||| |||| || ||||||| ||||||||||||||||| ||||||| ||||    
T  48095479 aattcaaaactactataataggagagattttgatggctgattatatataagcatatttcggattataaaattcgaa 48095404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 25752066 - 25751997
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatcc 151  Q
    ||||||||| |||||||  ||||| |||||| || ||||||||||||| ||  ||||||| |||||||||    
T  25752066 tcaaaactgttgaaatgtgagagagtctgatggctgattatacataagaattgttcggattataaaatcc 25751997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 27631986 - 27631909
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||| ||||||||  | |||||||||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  27631986 tcaaaactactgaaatgtgaaagattctgatggctgattatacataagaattgtccggattataaaatccgaaatagt 27631909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 34973409 - 34973486
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    ||||||||  |||||||  |||||||||||| || ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  34973409 tcaaaactattgaaatgtgagagattctgatggctgattatacataagaattgtccggattataaaatccgaaatagt 34973486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 53893637 - 53893560
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||| || ||  |||| |||||||| ||| ||||    
T  53893637 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattttctggattataaaatctgaaatagt 53893560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 2505650 - 2505570
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||| || ||||||||||  ||||| | |||| || ||||||||||||| ||  ||||||| |||||||||||| ||||    
T  2505650 aattcacaattgctgaaatgtgagagagtttgatggctgattatacataagaattattcggattataaaatccgaaatagt 2505570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 47874267 - 47874339
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||||||||||   ||||| |||||| || ||||||||||||| ||  | ||||| ||||||||||||    
T  47874267 tcaaaactgctgaaatatgagagagtctgatagctgattatacataagaattgtccggattataaaatccgaa 47874339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 206
Target Start/End: Complemental strand, 421078 - 420951
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    ||||||||||| ||||||||  ||||||||||||||  |||||||||||| |||| ||||||| | ||||||||||| | ||||||||||| ||  ||||    
T  421078 aattcaaaactactgaaatgtgagagattctgattgttgattatacataaacataattcggattagaaaatccgaatcaatgaaaaatcatttcggattt 420979  T
Q  179 taaaatccgagaacctcatgggcatttt 206  Q
    |||||||||| || || |||||||||||    
T  420978 taaaatccgaaaatcttatgggcatttt 420951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 5456537 - 5456626
Alignment:
Q  72 aaaacataattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtga 161  Q
    |||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||  |||||| ||| |||||||||||||| ||||    
T  5456537 aaaacaaaattcaaaactgctgaaatgaaagagattctgattgctgattatacataagtctatttcagattataaaatccgaattggtga 5456626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 11185805 - 11185730
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||| ||||||||||  ||||||||||||||| |||||||||||| |||||||||||| ||||||||||||    
T  11185805 aattcaaaattgctgaaatgagagagattctgattgctgattatacataaacatatttcggattataaaatccgaa 11185730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 8738870 - 8738795
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||| ||||||||| ||||||||| ||||||| ||||||||||||||||| || |||| || |||||||||    
T  8738870 aattcaaaattgctgaaattgaagagattatgattgctgattatacataagcatagtttggattatgaaatccgaa 8738795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 156
Target Start/End: Complemental strand, 6800568 - 6800491
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaatt 156  Q
    ||||||||||||||||||||  ||||||||||||| | |||||||||||| ||||||   ||| ||||||||| ||||    
T  6800568 aattcaaaactgctgaaatgtgagagattctgattactgattatacataaccatattcaagattataaaatccaaatt 6800491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 151
Target Start/End: Complemental strand, 31928746 - 31928674
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatcc 151  Q
    ||||||||||||||||||||  |||||||||||| || ||||||||||||| ||  | ||||| |||||||||    
T  31928746 aattcaaaactgctgaaatgtgagagattctgatggctgattatacataagaattgtccggattataaaatcc 31928674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 154
Target Start/End: Original strand, 16429503 - 16429578
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||| || |||||||| ||||||| ||||||| ||||||||||||| ||| || |||| || |||||||||    
T  16429503 aattcaaaattgttgaaatgggagagattatgattgctgattatacataaggatagtttggattatgaaatccgaa 16429578  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 31220956 - 31220879
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  ||||| | ||||||| ||||||||||||| ||  | ||||| |||||||||||| ||||    
T  31220956 tcaaaactgctgaaatgtgagagagtttgattgctgattatacataagaattgtccggattataaaatccgaaatagt 31220879  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 154
Target Start/End: Original strand, 7884704 - 7884776
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||| ||   |||||| ||||||||||||    
T  7884704 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgatcggattataaaatccgaa 7884776  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 154
Target Start/End: Complemental strand, 28624211 - 28624137
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||||| |||||||||  |||||| | |||   ||||||||||||||||||||||||| ||||||| ||||    
T  28624211 aattcaaaactactgaaatggc-gagattttaattattgattatacataagcatatttcggattataaaattcgaa 28624137  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 207
Target Start/End: Original strand, 21070899 - 21070981
Alignment:
Q  125 ataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattttaaaatccgagaacctcatgggcattttc 207  Q
    |||||||| |||| ||  |||||| |||||||||| |||||| || ||  |||||||||||||| ||| |||||| |||||||    
T  21070899 ataagcatgtttcagaatataaaacccgaattagtaaaaaataatttcggattttaaaatccgaaaacgtcatggacattttc 21070981  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 28445109 - 28445055
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcata 133  Q
    ||||||||| || |||||||  ||||||| ||||||| |||||||||||||||||    
T  28445109 aattcaaaattggtgaaatgagagagattatgattgctgattatacataagcata 28445055  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 187
Target Start/End: Complemental strand, 32841592 - 32841487
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattttaa 181  Q
    |||||| || |||||||  ||||| |||||| || ||||||| ||||| ||  | ||||| |||||||||||| |||||||| || |   ||||||||||    
T  32841592 tcaaaattgttgaaatgtgagagagtctgatagctgattatatataagaattgtccggattataaaatccgaaatagtgaaacatgaatccaaattttaa 32841493  T
Q  182 aatccg 187  Q
    ||||||    
T  32841492 aatccg 32841487  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Complemental strand, 38692411 - 38692334
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||| ||  | ||||| |||||||| ||| ||||    
T  38692411 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattataaaatctgaaatagt 38692334  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 9439290 - 9439226
Alignment:
Q  86 aactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatc 150  Q
    |||||||||||||||||||||| ||||||  | ||||  |||| |||||||||||| ||| ||||    
T  9439290 aactgctgaaatggaagagattttgattgatgcttatgtataaacatatttcggattatataatc 9439226  T

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Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 157
Target Start/End: Complemental strand, 13799157 - 13799079
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaatta 157  Q
    |||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||  |||||||| ||||||    
T  13799157 aattcaaaactgctgaaatgtaagagattctgattgctgattatacataagcatagttcggaatataaaatctgaatta 13799079  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 79 - 188
Target Start/End: Complemental strand, 4655479 - 4655370
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattt 178  Q
    ||||||||||||||||||| | |||||||||||| || ||||||||||||||||||||| ||| ||||||| | ||||||| |||||| |  ||  ||||    
T  4655479 aattcaaaactgctgaaataggagagattctgatagctgattatacataagcatatttcagattataaaattcaaattagtaaaaaatgaattcggattt 4655380  T
Q  179 taaaatccga 188  Q
    ||||||||||    
T  4655379 taaaatccga 4655370  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 14037591 - 14037523
Alignment:
Q  79 aattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaa 147  Q
    |||||||||||||||||||   ||||||||||||||| |||||||||||| ||||| |||||| |||||    
T  14037591 aattcaaaactgctgaaatatgagagattctgattgctgattatacataaacatatatcggattataaa 14037523  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 206
Target Start/End: Original strand, 32044762 - 32044885
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaaaatcatgtcaaattttaa 181  Q
    |||||||| ||||||||  |||||||||||| || ||||||||||||| ||  | ||||| |||||||||||| |||| ||| || ||  || ||| | |    
T  32044762 tcaaaactactgaaatgtgagagattctgatggctgattatacataagaattgtccggattataaaatccgaaatagt-aaacatgattccagattatga 32044860  T
Q  182 aatccgagaacctcatgggcatttt 206  Q
    ||||||| ||||||| |||||||||    
T  32044861 aatccgaaaacctcaagggcatttt 32044885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 154
Target Start/End: Original strand, 17264951 - 17265033
Alignment:
Q  72 aaaacataattcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaa 154  Q
    |||||| || |||||||||||||||||  ||||| |||||| || ||||||||||||| ||  | ||||| ||||||||||||    
T  17264951 aaaacaaaactcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattataaaatccgaa 17265033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 9905603 - 9905684
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagtgaaa 163  Q
    |||||||||||||||||  | ||| |||||| || ||||||||||||| ||  ||||||| ||||||||  || ||||||||    
T  9905603 tcaaaactgctgaaatgtgaaagagtctgatggctgattatacataagaattgttcggattataaaatcgaaaatagtgaaa 9905684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 159
Target Start/End: Original strand, 13096706 - 13096783
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatccgaattagt 159  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||| ||  | ||||| |||||||| ||| ||||    
T  13096706 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattatccggattataaaatctgaaatagt 13096783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 34528974 - 34529048
Alignment:
Q  83 caaaactgctgaaatggaagagattctgattgcgg---attatacataagcatatttcggatcataaaatccgaa 154  Q
    ||||||||||||||||   |||||||||||||| |   |||||||||||||||||||   || ||||||||||||    
T  34528974 caaaactgctgaaatgagggagattctgattgctggtgattatacataagcatatttaacattataaaatccgaa 34529048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 173979 - 173910
Alignment:
Q  82 tcaaaactgctgaaatggaagagattctgattgcggattatacataagcatatttcggatcataaaatcc 151  Q
    |||||||||||||||||  ||||| |||||| || ||||||||||||| ||  | ||||| |||||||||    
T  173979 tcaaaactgctgaaatgtgagagagtctgatggctgattatacataagaattgtccggattataaaatcc 173910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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