View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15406_low_4 (Length: 395)
Name: NF15406_low_4
Description: NF15406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15406_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 13 - 347
Target Start/End: Complemental strand, 54307430 - 54307096
Alignment:
| Q |
13 |
aagaatataacattcatttctgtacattcatttaaaagaaatatggacataacaaactactccatccattccacaatataatttattttaaccaaaaata |
112 |
Q |
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| T |
54307430 |
aagaatataacattcatttctgtacattcatttaaaagaaaaatggacataacaaactactccatccattccacaatataatttattttaaccaaaaata |
54307331 |
T |
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| Q |
113 |
ttgtcatgtcattttatattatcaatgaaattttaatttttgttctttatataaagatatcggttgaacaagtgaccaactcatgtggttaacgagctct |
212 |
Q |
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| T |
54307330 |
ttgtcatgtcattttatattatcaaagaaattttaatttttgttctttatataaatatattggttgaacaagtgaccaactcatgtggttaacgagctct |
54307231 |
T |
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| Q |
213 |
ccctggaagtacgaaacaattcttaattaagcacaagaaatctactattcttaacaaagcaatgcgagtatctacatccaagtatcaaatgctttactaa |
312 |
Q |
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| T |
54307230 |
ccctggaaagaagaaacaattcttaattaagcacaagaaatctactattcttaacaaagcaatgcgagtatctacatccaagtatcaaatgctttactaa |
54307131 |
T |
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| Q |
313 |
gtaaaccataatttacatggatagtaaaaagcaat |
347 |
Q |
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| T |
54307130 |
gtaaaccataatttacatggatagtaaaaagcaat |
54307096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 244 - 342
Target Start/End: Complemental strand, 54301775 - 54301677
Alignment:
| Q |
244 |
cacaagaaatctactattcttaacaaagcaatgcgagtatctacatccaagtatcaaatgctttactaagtaaaccataatttacatggatagtaaaaa |
342 |
Q |
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| T |
54301775 |
cacaagaaaagtaccatccttaacaaagcaatatgagtatttacatccaagtatccaatgttctactaagtaaaccataatttacacagatagcaaaaa |
54301677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 132 - 167
Target Start/End: Complemental strand, 54302070 - 54302035
Alignment:
| Q |
132 |
tatcaatgaaattttaatttttgttctttatataaa |
167 |
Q |
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| T |
54302070 |
tatcaatgaaattttattttttgttctttatataaa |
54302035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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