View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15406_low_5 (Length: 350)
Name: NF15406_low_5
Description: NF15406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15406_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 41215906 - 41216226
Alignment:
| Q |
19 |
catacaccccagtgttgttgaaaaattagatgtaaaacaagtaatgtttttgccccgtaaagtgaaaaacaaaaggaaaactattgatgacaattcgtgt |
118 |
Q |
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| T |
41215906 |
catacaccccagtgttgttgaaaaattagatgtaaaacaagtaatgattttgccccgtaaagggaaaaacaaatggaaaactattgatgacaattcgtgt |
41216005 |
T |
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| Q |
119 |
gtgtacagctgttagtaaactcctttctaggattacttcactcgacaagttcaacttcaaatcgtttgttatatttgtcaaattagctgaaacacactca |
218 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41216006 |
gtgtacagctgttagtaaactcctttctgggattacttcactcgacaagttcaacttcaaatcgtttgttatatttgtcaaattagctgaaacacattca |
41216105 |
T |
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| Q |
219 |
attaagagagtcacccaattccacattcacttaagaaatatcctacattacgaacatacaaaaactctctgtatcattttgcataaaatgaattgaaata |
318 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41216106 |
attaagagagtcacccaatttcacattcacttaagaaatatcctacattgcgaacatacaaaaactctctgtatcattttgcataaaatgaattgaaata |
41216205 |
T |
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| Q |
319 |
caatgtctaactcatattcat |
339 |
Q |
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|||||||||| |||||||||| |
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| T |
41216206 |
caatgtctaaatcatattcat |
41216226 |
T |
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