View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15406_low_6 (Length: 298)
Name: NF15406_low_6
Description: NF15406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15406_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 14732045 - 14731779
Alignment:
| Q |
19 |
tacattgcatgcccacagattacctgacaaatacaaataaaacaagaattaggacaaaacaaaataaatgtcttattttcttatgataaacaaaaaatta |
118 |
Q |
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| T |
14732045 |
tacattgcatgcccacagattacctgacaaatacaaataaaacaagaattaggacaaaacaaaataaatgtcttattttcttatgataaacaaaaaatta |
14731946 |
T |
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| Q |
119 |
tgtaagagtggtctaaccttttatacagggcttttacatcttcccctaacaatggactttctagaaacatatcaccacattccttcacatcaactgtctc |
218 |
Q |
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| T |
14731945 |
tgtaagagtggtctaaccttttatacagggcttttacatcttcccctaacaatggactttctagaaacatatcaccacattccttcacatcaactgtctc |
14731846 |
T |
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| Q |
219 |
aacttcaaaagctttgtcaccacaatattcattccattcaaaccacattttcgaaattaattccttc |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14731845 |
aacttcaaaagctttgtcaccacaatattcattccattcaaaccacattttcgaaattaattccttc |
14731779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 27 - 285
Target Start/End: Original strand, 13951771 - 13952024
Alignment:
| Q |
27 |
atgcccacagattacctgacaaatacaaataaaacaagaattaggacaaaacaaaataaatgtcttattttcttatgataaacaaaaaattatgtaagag |
126 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| || | |||||||| ||||||| ||||||| |||||| || |||| || |
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| T |
13951771 |
atgcccacatgttacctgacaaatacaaataaaacaagaattaggaaaata-----taaatgtcatattttcgtatgatatgcaaaaaggtaagtaaaag |
13951865 |
T |
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| Q |
127 |
tggtctaaccttttatacagggcttttacatcttcccctaacaatggactttctagaaacatatcaccacattccttcacatcaactgtctcaacttcaa |
226 |
Q |
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|||||||||||||||||||| |||||||| |||||||||||||| || || |||||||| | |||||||||||| |||||||||| ||| |||||||||| |
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| T |
13951866 |
tggtctaaccttttatacagagcttttacgtcttcccctaacaacgggctctctagaaatagatcaccacattctttcacatcaagtgtttcaacttcaa |
13951965 |
T |
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| Q |
227 |
aagctttgtcaccacaatattcattccattcaaaccacattttcgaaattaattccttc |
285 |
Q |
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| T |
13951966 |
atgcacggtcaccacaatattcattccattcaaaccacatttttgagattaactccttc |
13952024 |
T |
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