View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15406_low_8 (Length: 241)
Name: NF15406_low_8
Description: NF15406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15406_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 54307003 - 54306778
Alignment:
| Q |
1 |
cccatgataaaaat-gaactatacctacttggattttctgaaattcaaacatgggattaatcttctgacttgttaaacaagagtttggaagagatgcaac |
99 |
Q |
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| T |
54307003 |
cccatgataaaaattgaactatacctacttggattttctgaaattcaaacatgggattaatcttctgacatgttaaacaagagtttgaaagagatgcaac |
54306904 |
T |
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| Q |
100 |
tcgaggaagattaaagatcaaatctccaaatcagtccttcctgaaccagcaatccataagccacttaattttaaaagcgacgcttcatcctttcgttgat |
199 |
Q |
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| T |
54306903 |
tcgaggaagattaaagatcaaatctccaaatcagtccttcctgaaccagcaatccatcagccacttaattttaaaagcgacgcttcatactttcgttgat |
54306804 |
T |
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| Q |
200 |
aaattttcaaacattaatgagcaagc |
225 |
Q |
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| T |
54306803 |
aaattttcaaacattaatgagcaagc |
54306778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 54301574 - 54301426
Alignment:
| Q |
1 |
cccatgataaaaat-gaactatacctactt-ggattttctgaaat-tcaaacatgggattaatcttctgacttgttaaacaagag-tttggaagagatgc |
96 |
Q |
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| T |
54301574 |
cccatgataaaaatcgaactatacgtactttggatattctgaaatgtcaaacatttgattaatcttgtgacatgttaaacaagaactttggaagagatgc |
54301475 |
T |
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| Q |
97 |
aactcgaggaagattaaagatcaaatctccaaatcagtccttcctgaac |
145 |
Q |
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| T |
54301474 |
aattcgaggaagattaaaaagcaaatctccaaatgagtccttcctgaac |
54301426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 54289134 - 54289043
Alignment:
| Q |
51 |
tgggattaatcttctgacttgttaaacaagagttt-ggaagagatgcaactcgaggaagattaaagatcaaatctccaaatcagtccttcct |
141 |
Q |
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||||| ||||||||||| ||| |||||||| ||| ||||||||||||| |||||||||| ||| | ||||||||||||| |||| ||||| |
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| T |
54289134 |
tgggactaatcttctgatatgtcaaacaagaattttggaagagatgcaattcgaggaagactaagaagcaaatctccaaatgagtctttcct |
54289043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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