View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15407_high_1 (Length: 809)

Name: NF15407_high_1
Description: NF15407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15407_high_1
NF15407_high_1
[»] chr6 (3 HSPs)
chr6 (288-571)||(20613497-20613780)
chr6 (1-289)||(20613838-20614125)
chr6 (606-789)||(20613279-20613462)
[»] chr5 (3 HSPs)
chr5 (744-789)||(18768412-18768457)
chr5 (744-789)||(28866478-28866523)
chr5 (744-787)||(15974190-15974233)
[»] chr4 (3 HSPs)
chr4 (744-789)||(29096098-29096143)
chr4 (744-789)||(37987237-37987282)
chr4 (744-789)||(26494399-26494444)
[»] chr2 (2 HSPs)
chr2 (746-789)||(5887857-5887900)
chr2 (744-789)||(30076535-30076580)
[»] scaffold0060 (1 HSPs)
scaffold0060 (744-789)||(35658-35703)
[»] chr8 (1 HSPs)
chr8 (417-507)||(30117178-30117265)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 288 - 571
Target Start/End: Complemental strand, 20613780 - 20613497
Alignment:
Q  288 catctctacttctgccttgattatgatcaagtaggaattgtaagtattttgttttccatatgttgtcaagtatctgcctagacaataatatcctcaattt 387  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  20613780 catctctacttctgccttgattatgatcaagtaggaatggtaagtattttcttttccaaatgttgtcaagtatctgccaagacaataatatcctcaattt 20613681  T
Q  388 acaggtttgaaaaccaaaaagactctcatctttcctctaaaactgtttccaagtcgatcaattgcacttgccatcttcttctaatcaatgatcaagagaa 487  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20613680 acaggtttgaaaaccaaaaagactttcatctttcctctaaaactgtttccaagttgatcaattgcacttgccatcttcttctaatcaatgatcaagagaa 20613581  T
Q  488 tgatgcatatgattcttgatgaatcttgaatgatcggaggtgtatgttgctgataccagttgataggattgcatggagaatagt 571  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  20613580 tgatgcatatgattcttgatgaatcttgaatgaccggaggtgtatgttgctgataccagttgataggattgtagggagaatagt 20613497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 20614125 - 20613838
Alignment:
Q  1 ggtgtagcataacaatatccttgtaacaaacttataaagttagttttagttatataccttacagattaaagtctcaattcaatgtaatattcaacaatca 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||||||| ||||    
T  20614125 ggtgtagcataacactatccttgtaacaaacttataaagttagttttagttatatagcttacagattaaaaactcaattcaatgtaatattcaacgatca 20614026  T
Q  101 gagaataaaaaataagctttaaagcattgtgaataatctcttacactctctctgttatggaatataaatctcaatcccaattctaccctagttcaataac 200  Q
    || ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20614025 gaaaataaaaaacaagctttaaagc-ttgtgaataatctcttacactctctctgttatggaacataaatctcaatcccaattctaccctagttcaataac 20613927  T
Q  201 atgtatatgaaatcccatagattcctcgattatgatcttctctagtgcaaaccgctactccagtagttgcaacaaccgcgcctctgcca 289  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  20613926 gtgtatatgaaatcccatagattcctcgattatgatcttctctagtgcaaactgctactccaatagttgcaacaaccgcgcctctgcca 20613838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 164; E-Value: 3e-87
Query Start/End: Original strand, 606 - 789
Target Start/End: Complemental strand, 20613462 - 20613279
Alignment:
Q  606 gtgtgaatttttgtgtatgcaacaactccttgacttcaatagtatacatatacgatgtggtgataggttttctatatcatacatagccccaataatctaa 705  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  20613462 gtgtgaatttttgtgtatgcaacaactccttgacttcaatagtatacatatacgacgtggtgataggttttctatatcatacatagccccaataatctaa 20613363  T
Q  706 ttataacatatggttaattacttgcataacacataactagtggcggatcttataaggggcaggcaggtgccatggcatccccca 789  Q
    |||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| ||||||||||||||||||||    
T  20613362 ttataacatatggttaattacttgcataacacgtaactagtgacagatcttataaggggcaggtaggtgccatggcatccccca 20613279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 744 - 789
Target Start/End: Complemental strand, 18768457 - 18768412
Alignment:
Q  744 agtggcggatcttataaggggcaggcaggtgccatggcatccccca 789  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  18768457 agtggcggatcttctaaggggcaggcaggtgccatggcatccccca 18768412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 744 - 789
Target Start/End: Complemental strand, 28866523 - 28866478
Alignment:
Q  744 agtggcggatcttataaggggcaggcaggtgccatggcatccccca 789  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  28866523 agtggcggatcttctaaggggcaggcaggtgccatggcatccccca 28866478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 744 - 787
Target Start/End: Complemental strand, 15974233 - 15974190
Alignment:
Q  744 agtggcggatcttataaggggcaggcaggtgccatggcatcccc 787  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  15974233 agtggcggatcttctaaggggcaggcaggtgccatggcatcccc 15974190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 744 - 789
Target Start/End: Original strand, 29096098 - 29096143
Alignment:
Q  744 agtggcggatcttataaggggcaggcaggtgccatggcatccccca 789  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  29096098 agtggcggatcttctaaggggcaggcaggtgccatggcatccccca 29096143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 744 - 789
Target Start/End: Complemental strand, 37987282 - 37987237
Alignment:
Q  744 agtggcggatcttataaggggcaggcaggtgccatggcatccccca 789  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  37987282 agtggcggatcttctaaggggcaggcaggtgccatggcatccccca 37987237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 744 - 789
Target Start/End: Original strand, 26494399 - 26494444
Alignment:
Q  744 agtggcggatcttataaggggcaggcaggtgccatggcatccccca 789  Q
    ||||||||||||| ||| |||||||||||||||||| |||||||||    
T  26494399 agtggcggatcttctaaagggcaggcaggtgccatgacatccccca 26494444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 746 - 789
Target Start/End: Original strand, 5887857 - 5887900
Alignment:
Q  746 tggcggatcttataaggggcaggcaggtgccatggcatccccca 789  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||    
T  5887857 tggcggatcttctaaggggcaggtaggtgccatggcatccccca 5887900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 744 - 789
Target Start/End: Complemental strand, 30076580 - 30076535
Alignment:
Q  744 agtggcggatcttataaggggcaggcaggtgccatggcatccccca 789  Q
    ||||||||||||| |||||| ||||||||||  |||||||||||||    
T  30076580 agtggcggatcttctaagggacaggcaggtgttatggcatccccca 30076535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 744 - 789
Target Start/End: Original strand, 35658 - 35703
Alignment:
Q  744 agtggcggatcttataaggggcaggcaggtgccatggcatccccca 789  Q
    ||||||||||||| |||||||||| || ||||||||||||||||||    
T  35658 agtggcggatcttttaaggggcagccaagtgccatggcatccccca 35703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 417 - 507
Target Start/End: Complemental strand, 30117265 - 30117178
Alignment:
Q  417 ctttcctctaaaactgtttccaagtcgatcaattgcacttgccatcttcttctaatcaatgatcaagagaatgatgcatatgattcttgat 507  Q
    |||||||| |||||||||||||||| |||| || | |||||   || ||||||||||||||| |||| ||  |||||| ||||||||||||    
T  30117265 ctttcctccaaaactgtttccaagttgatccatagtacttg---tcatcttctaatcaatgagcaagtgagggatgcaaatgattcttgat 30117178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University