View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15407_high_2 (Length: 766)

Name: NF15407_high_2
Description: NF15407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15407_high_2
NF15407_high_2
[»] chr4 (1 HSPs)
chr4 (38-749)||(43543373-43544099)


Alignment Details
Target: chr4 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 38 - 749
Target Start/End: Complemental strand, 43544099 - 43543373
Alignment:
Q  38 ccgccgcgacctatgctaaatccacctcctccaggaggtggtaaaaagtgaggaatcggggtaaccggagcggatccaaaaccagtcggtgcatgagatg 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43544099 ccgccgcgacctatgctaaatccacctcctccaggaggtggtaaaaagtgaggaatcggggtaaccggagcggatccaaaaccagtcggtgcatgagatg 43544000  T
Q  138 catatggagcagcaccgtacggagcagggccgccgcggccgaaattctgcggcggcataggaccaacgagatcactaaaacaatnnnnnnnnnnnnnn-- 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||                    
T  43543999 catatggagcagcaccgtacggagcagggccgccgcggccgaaattctgcggcggcataggtccaacgagatcactaaaacaataaaaaaaaataaaaaa 43543900  T
Q  236 cgcgtttgtttcattccaattattctaataaatgatnnnnnnngaagattaagaaagcgaaggtacctgcgacggccgcgaaaagaagtggaatcggagt 335  Q
    |||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43543899 cgcgtttgtttcattccaattattctaacaaatgataaaaaaagaagattaagaaagcgaaggtacctgcgacggccgcgaaaagaagtggaatcggagt 43543800  T
Q  336 atctattgtcgtaggggttcatgatttgagattgattctagggtttacgaaaaagcgcgatttgaagtgtgaggaataggtttgaaagataagaatctcg 435  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43543799 acctattgtcgtaggggttcatgatttgagattgattctagggtttacgaaaaaacgcgatttgaagtgtgaggaataggtttgaaagataagaatctcg 43543700  T
Q  436 ttagattttggttcttctagacaaacactcacccctttg------agagggtagagttggttcttccctgtagtctttgaatgaatctgagtatgtctca 529  Q
    |||||||||||||||||||||||||||||||| ||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43543699 ttagattttggttcttctagacaaacactcacgcctttggctttgagagggtagagttggttcttccctgtagtctttgaatgaatctgagtatgtctca 43543600  T
Q  530 cgcgccaattttataaggctgtgtttggcaatgcaaaaccgccttttatctttagagtgtactattgttttctttgtagggcaaatacattttgcactat 629  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43543599 cgcgccaattttataaggctgtgtttggcaatgcaaaaccgccttttatctttagagtgtactattgttttctttttagggcaaatacattttgcactat 43543500  T
Q  630 tttaatttagatttagacattgatatgtcccataaggaatggataaa-------atggtgtccggtgttctagcatggtgggagaaccgtcttcacgcag 722  Q
    |||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||| |||||| ||||    
T  43543499 tttaatttagatttagacattgatatgtcccataaggaatggataaaagcaaggatggtgtgcggtgttctagcatggtgggagaaccatcttcaagcag 43543400  T
Q  723 agcaaaagatgtttacaggcacgtaag 749  Q
    |||||||||||||| ||||||||||||    
T  43543399 agcaaaagatgtttgcaggcacgtaag 43543373  T

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