View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15407_high_4 (Length: 412)
Name: NF15407_high_4
Description: NF15407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15407_high_4 |
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| [»] scaffold0728 (4 HSPs) |
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Alignment Details
Target: scaffold0728 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 24 - 399
Target Start/End: Original strand, 2324 - 2699
Alignment:
| Q |
24 |
tacttgatctagtctagttagttggatgcacgtgtaatttttgttacacgtcgatacataaaaattgtttcatggagtagtactaattgcataattggca |
123 |
Q |
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| T |
2324 |
tacttgatctagtctaattagttggatgcacgtgtaatttttgttacacgtggatacataaaaattgtttgatggagtagtactaattgcataattggca |
2423 |
T |
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| Q |
124 |
atttattatcttccatatttgatgcactagtaataatgaagaatattttcattctggatttaactcccacaagtgactcatgtccttgaacattccaatc |
223 |
Q |
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| T |
2424 |
atttattatcttccatatttgatgcactagtaataatgaagaatattttcattctggatttaactcccacaagtgactcatgtccttgaacattccaatc |
2523 |
T |
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| Q |
224 |
attggcacaagcactacatgtcacactgactcaaatgacttcacattgactcagcagtatttctatttcaacattccaannnnnnnngcatataaattcc |
323 |
Q |
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| T |
2524 |
attggcacacgcactacatgtcacactgactcaaatgacttcacattgactcagcagtatttctatttcatcattccaattttttttgcatataaattcc |
2623 |
T |
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| Q |
324 |
cctgaaattttggtacatttccatttccatttcaatttctgaactataaaacattactctcttgctctcatgtttc |
399 |
Q |
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| T |
2624 |
cctgaaattttggtacatttccatttccatttcaatttctgaactataaaacattactctcttgctctcatgtttc |
2699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 10 - 186
Target Start/End: Original strand, 972 - 1152
Alignment:
| Q |
10 |
aatataactataaata----cttgatctagtctagttagttggatgcacgtgtaatttttgttacacgtcgatacataaaaattgtttcatggagtagta |
105 |
Q |
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| T |
972 |
aatataactataaatatctacttgatctagtctaattagttggatgcacgtgtaatttttgttacacgtggatacataaaaattgtttcatggagtagta |
1071 |
T |
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| Q |
106 |
ctaattgcataattggcaatttattatcttccatatttgatgcactagtaataatgaagaatattttcattctggatttaa |
186 |
Q |
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| T |
1072 |
ctaattgcataattggcaatttattatcttccatatttgatgcactagtaataatgaagaatattttcattctggatttaa |
1152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 95 - 186
Target Start/End: Original strand, 6001 - 6092
Alignment:
| Q |
95 |
atggagtagtactaattgcataattggcaatttattatcttccatatttgatgcactagtaataatgaagaatattttcattctggatttaa |
186 |
Q |
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| T |
6001 |
atggagtagtactaattgcataattggcaatttattatcttccatatttgatgcactagtaataatgaagaatattttcattctggatttaa |
6092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 7264 - 7333
Alignment:
| Q |
24 |
tacttgatctagtctagttagttggatgcacgtgtaatttttgttacacgtcgatacataaaaattgttt |
93 |
Q |
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| T |
7264 |
tacttgatctagtctaattagttggatgcacgtgtaatttttgttacacgtggatacataaaaattgttt |
7333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 95 - 399
Target Start/End: Original strand, 19406829 - 19407133
Alignment:
| Q |
95 |
atggagtagtactaattgcataattggcaatttattatcttccatatttgatgcactagtaataatgaagaatattttcattctggatttaactcccaca |
194 |
Q |
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| T |
19406829 |
atggagtagtactaattgcataattggcaatttattatcttccatatttgatgcactagtaataatgaagaatattttcattctggatttaactcccaca |
19406928 |
T |
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| Q |
195 |
agtgactcatgtccttgaacattccaatcattggcacaagcactacatgtcacactgactcaaatgacttcacattgactcagcagtatttctatttcaa |
294 |
Q |
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| T |
19406929 |
agtgactcatgtccttgaacattccaatcattggcacacgcactacatgtcacactgactcaaatgacttcacattgactcagcagtatttctatttcat |
19407028 |
T |
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| Q |
295 |
cattccaannnnnnnngcatataaattcccctgaaattttggtacatttccatttccatttcaatttctgaactataaaacattactctcttgctctcat |
394 |
Q |
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| T |
19407029 |
cattccaattttttttgcatataaattcccctgaaattttggtacatttccatttccatttcaatttctgaactataaaacattactctcttgctctcat |
19407128 |
T |
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| Q |
395 |
gtttc |
399 |
Q |
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| T |
19407129 |
gtttc |
19407133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 102
Target Start/End: Complemental strand, 13762901 - 13762839
Alignment:
| Q |
41 |
ttagttggatgcacgtgtaat-ttttgttacacgtcgatacataaaaattgtttcatggagta |
102 |
Q |
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| T |
13762901 |
ttagttggttgcacgtgtaatttttttttacacgtcaatacataaaagttgtttaatagagta |
13762839 |
T |
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