View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15407_high_5 (Length: 384)
Name: NF15407_high_5
Description: NF15407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15407_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 15 - 365
Target Start/End: Complemental strand, 24771412 - 24771062
Alignment:
| Q |
15 |
atgaatttgtggcatgatatcttgtaggagtatacggttcctttctcctcgcttgttatgacgtcgatacacaagaatttcaaactatttctaagacagg |
114 |
Q |
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| T |
24771412 |
atgaatttgtggcatgatatcttgtaggagtatacggttcctttctcctcgcttgttatgacgtcgatacacaagaatttcaaactatttctaagacagg |
24771313 |
T |
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| Q |
115 |
tgagtgttcttgatttaagttgctactccgttgtttcttgcatgtaaagttaatcatctctaatatagtaataatctgttatgatgtgtaggaactggat |
214 |
Q |
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| T |
24771312 |
tgagtgttcttgatttaagttgctactccgttgtttcttgcatataaagttaatcatctctaatatagtaataatctgttatgatgtgtaggaactggat |
24771213 |
T |
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| Q |
215 |
tcaaagatgaagatcttgaagaaagttccgctaggctccgcactaatctcattccgaaaccaaaggttccttcctcttgttcctttctaaaccttttgaa |
314 |
Q |
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| T |
24771212 |
tcaaagatgaagatcttgaagaaagttccgctaggctccgcactaatctcattccgaaaccaaaggttccttcctcttgttcctttctaaaccttttgaa |
24771113 |
T |
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| Q |
315 |
tgatgctcaatatttaattaagttattggaattgctcctttcatttcaggc |
365 |
Q |
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| T |
24771112 |
tgatgctcaatatttaattaagttattggaattgctcctttcatttcaggc |
24771062 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 295
Target Start/End: Original strand, 21004412 - 21004505
Alignment:
| Q |
202 |
gtaggaactggattcaaagatgaagatcttgaagaaagttccgctaggctccgcactaatctcattccgaaaccaaaggttccttcctcttgtt |
295 |
Q |
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| T |
21004412 |
gtaggaactggattcaaagaagaagtgcttgaagaacgttctactagccttcgctctaaagtgattcccaaaccaaaggttgctggctcttgtt |
21004505 |
T |
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