View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15407_high_6 (Length: 306)
Name: NF15407_high_6
Description: NF15407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15407_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 7 - 201
Target Start/End: Original strand, 3524422 - 3524618
Alignment:
| Q |
7 |
ggtagataatactatgtttactcttcaaaagcaaccaaagatccgannnnnnnncaaacctaagacctcctctttagtaagaccctcttattcatat--t |
104 |
Q |
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| T |
3524422 |
ggtacataatactatgtttactcttcaaaagcaaccaaagatccgattttttttcaaacctaagacctcctctttagtaagaccctcttattcatatatt |
3524521 |
T |
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| Q |
105 |
tgaagtctagagttgctatatacgtcaagcccattgattttctcctccaaatccccatacacttttcagttccacttcttgatttcaccctttatca |
201 |
Q |
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| T |
3524522 |
tgaagtctagagttgctatatacgtcaagcccattgattttctcctccaaatccccatacacttttcagttccacttcttgatttcaccctttatca |
3524618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 232 - 288
Target Start/End: Original strand, 3524616 - 3524672
Alignment:
| Q |
232 |
tcaaccctccaaaggaaaggagcattcctccaagaattttccaccaccgaatataag |
288 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3524616 |
tcaaccctccaaaggaaaggagcattcctccaagaattttccaccaccgaatgtaag |
3524672 |
T |
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