View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15407_low_10 (Length: 254)
Name: NF15407_low_10
Description: NF15407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15407_low_10 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 30047778 - 30048019
Alignment:
| Q |
13 |
agcacagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30047778 |
agcagagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
30047877 |
T |
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| Q |
113 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30047878 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
30047977 |
T |
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| Q |
213 |
tgagaatgaaccttctagttttgaagaagcttcattgataac |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
30047978 |
tgagaatgaaccttctagttttgaagaagcttcattgataac |
30048019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 7160140 - 7160376
Alignment:
| Q |
18 |
agacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcac |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |
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| T |
7160140 |
agacattgatgttgatgaaaatgcatattgggattggaaaaatgatgaggttcaaagaagtacagaatctgctgaaagtgctcatgacaaacaagaggac |
7160239 |
T |
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| Q |
118 |
acaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
7160240 |
acaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctggctgaagtttatgaaaattgcaattttgttgtga |
7160339 |
T |
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| Q |
218 |
atgaaccttctagttttgaagaagcttcattgataac |
254 |
Q |
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| T |
7160340 |
attaaccttctagttttgaagaagcttcattaataac |
7160376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 198237 - 197996
Alignment:
| Q |
13 |
agcacagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
198237 |
agcagagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
198138 |
T |
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| Q |
113 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
198137 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
198038 |
T |
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| Q |
213 |
tgagaatgaaccttctagttttgaagaagcttcattgataac |
254 |
Q |
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| T |
198037 |
tgagaatgaaccttctagttttgaagaagcttcattgataac |
197996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 254
Target Start/End: Original strand, 3944032 - 3944273
Alignment:
| Q |
13 |
agcacagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3944032 |
agcagagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
3944131 |
T |
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| Q |
113 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3944132 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccctaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
3944231 |
T |
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| Q |
213 |
tgagaatgaaccttctagttttgaagaagcttcattgataac |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
3944232 |
tgagaatgaaccttctagttttgaagaagcttcattgataac |
3944273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 39951398 - 39951157
Alignment:
| Q |
13 |
agcacagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951398 |
agcagagacattgatgttgatgaaaatgcatattgggattgggaaaattatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
39951299 |
T |
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| Q |
113 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39951298 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgt |
39951199 |
T |
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| Q |
213 |
tgagaatgaaccttctagttttgaagaagcttcattgataac |
254 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39951198 |
tgtgaatgaaccttctagttttgaagaagcttcattgataac |
39951157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 26220132 - 26219891
Alignment:
| Q |
13 |
agcacagacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaag |
112 |
Q |
| |
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|||| ||| ||| ||||||||||||||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||| |
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| T |
26220132 |
agcagagatattaatgttgatgaaaatgcatattcggattgagaaaatgatgaggtttaaattagtacaaaatctgctgaaattgctcctgacaaacaag |
26220033 |
T |
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| Q |
113 |
agcacacaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatg-aaaattgcaattttg |
211 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
26220032 |
agcacataacaaatgaagatgaaaatcagatagctgaatttgattccccaattctaaggagcaaatctctggctgaagtttatgaaaaattgcaattttg |
26219933 |
T |
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| Q |
212 |
ttgagaatgaaccttctagttttgaagaagcttcattgataac |
254 |
Q |
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||| |||| | |||||||| |||||||||| ||||||| |||| |
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| T |
26219932 |
ttgtgaataagccttctag-tttgaagaagtttcattgctaac |
26219891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 22363665 - 22363901
Alignment:
| Q |
18 |
agacattgatgttgatgaaaatgcatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcac |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22363665 |
agacattgatgttgatgaaaatgtatattgggattgggaaaatgatgaggttcaaagaagtacaaaatctgctgaaagtgctcatgacaaacaagagcac |
22363764 |
T |
|
| Q |
118 |
acaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctgtctgaagtttatgaaaattgcaattttgttgaga |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
22363765 |
acaacaaatgaagatgaaaatcagatagctgaatctgattccccaattctaaagagcaaatctctggctgaagtttatgaaaattgcaattttgttgtga |
22363864 |
T |
|
| Q |
218 |
atgaaccttctagttttgaagaagcttcattgataac |
254 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
22363865 |
atgaaccttctagttttgaagaagcttcattgataac |
22363901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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