View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15407_low_15 (Length: 204)
Name: NF15407_low_15
Description: NF15407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15407_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 50677430 - 50677551
Alignment:
| Q |
1 |
attttgttaatatttaacacatctacatgtccttttctctaattttgcagacttatatatcagtaagaaatactactaaaagaagaaacaatgagtgacc |
100 |
Q |
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| T |
50677430 |
attttgttaatatttaacacatctacatgtccttttctctaattttgcagacttatatatcagtaagaaatactactaaaagaagaaacaatgagtgacc |
50677529 |
T |
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| Q |
101 |
agtgaacctatgtttggattaa |
122 |
Q |
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|||||||||||||||||||||| |
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| T |
50677530 |
agtgaacctatgtttggattaa |
50677551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 50677577 - 50677617
Alignment:
| Q |
149 |
catccctcttttctattaaatcctaacttgttacatccttt |
189 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
50677577 |
catccctcttttctattaaatcctaacttgttacatccttt |
50677617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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