View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15407_low_4 (Length: 491)
Name: NF15407_low_4
Description: NF15407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15407_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 454; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 13 - 481
Target Start/End: Original strand, 1865621 - 1866090
Alignment:
| Q |
13 |
atactcaaaatacaaacatgagtctacaacaaggaatcagttggggggcaaacatatcaaaacctagatattcaagttcttctcctctcatgtttggtgc |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1865621 |
atactcaaaatacaaacatgagtctacaacaaggaatcagttggggggcaaacatatcaaaacctagatattcaagttcttctcctctcatgtttggtgc |
1865720 |
T |
|
| Q |
113 |
tgatggaaaagttgcgggg-ttaatccaaatatcggagatgcatctgttacaccaatcactaatgttgaacctaactcacgttctatgaatggagcaatt |
211 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1865721 |
tgatggaaaagttgcgggggttaatccaaatatcggagatgcatatgttacaccaatcactaatgttgaacctaactcacgttctgtgaatggagcaatt |
1865820 |
T |
|
| Q |
212 |
ctggatcatacaaagacttcttctaatgaactattgtctagaaattttagctttccagaagagtcttctcatgcttctttgtttttaggtatgtattctc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1865821 |
ctggatcatacaaagacttcttctaatgaactattgtctagaaattttagctttccagaagagtcttctcatgcttctttgtttttaggtatgtattctc |
1865920 |
T |
|
| Q |
312 |
tcttatgtttatgtggattaatgtgacccatttttcaattgttacatataaaaatgtattcttagttacaaagtatagtttgaattaatcaatgcaggta |
411 |
Q |
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| T |
1865921 |
tcttatgtttatgtggattaatgtgacccatttttcaattgttacatataaaaatgtattcttagttacaaagtatagtttgaattaatcaatgcaggta |
1866020 |
T |
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| Q |
412 |
gtagttcatctccttctttgactggtgtattggatgattatcctagaccgccaccttttttaaattttga |
481 |
Q |
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| T |
1866021 |
gtagttcatctccttctttgactggtgtattggatgattatcctagaccgccaccttttttaaattttga |
1866090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 13 - 153
Target Start/End: Original strand, 1865369 - 1865510
Alignment:
| Q |
13 |
atactcaaaatacaaacatgagtctacaacaaggaatcagttggggggcaaacatatcaaaacctagatattcaagttcttctcctctcatgtttggtgc |
112 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1865369 |
atactcaaaatacaaacatgagtctacaacaaggaatcagtgggggggcaaacatatcaaaacctggatattcaagttcttctcctctcatgtttggcat |
1865468 |
T |
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| Q |
113 |
tgatggaaaagttg-cggggttaatccaaatatcggagatgc |
153 |
Q |
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| T |
1865469 |
tgatggaaaagctgtagaggttaatccaaatatcggagatgc |
1865510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 35440815 - 35440700
Alignment:
| Q |
11 |
ttatactcaaaatacaaacatgagtctacaacaaggaatcagttggggggcaaacatatcaaaacctagatattcaagttcttctcctctcatgtttggt |
110 |
Q |
| |
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||||||||| || ||||||||| || | ||||||||||||| | | ||| |||| |||||||||| |||||||||||| |||||||| |||||||||| |
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| T |
35440815 |
ttatactcataacacaaacatgggtgtgcaacaaggaatcaatggtgggatgaacacatcaaaacctggatattcaagttattctcctcacatgtttggt |
35440716 |
T |
|
| Q |
111 |
gctgatggaaaagttg |
126 |
Q |
| |
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||| ||||||| |||| |
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| T |
35440715 |
gctcatggaaatgttg |
35440700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 35440960 - 35440916
Alignment:
| Q |
82 |
attcaagttcttctcctctcatgtttggtgctgatggaaaagttg |
126 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
35440960 |
attcaagtttttctcctcacatgtttggtgctgatggaaaagttg |
35440916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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