View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15407_low_5 (Length: 461)
Name: NF15407_low_5
Description: NF15407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15407_low_5 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 315; Significance: 1e-177; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 27 - 461
Target Start/End: Complemental strand, 40403551 - 40403116
Alignment:
| Q |
27 |
caaagcaggaaa-caaacctggtctgctatatgactcacagtttccacgcattttccacaatcctcctgcgctttgccttttgaactcgacttatcatac |
125 |
Q |
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| T |
40403551 |
caaagcaggaaagcaaacctggtctgctatatgactcgcattttccacgcattttccacaatcctcctgcgctttgccttttgaactcgacttatcatac |
40403452 |
T |
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| Q |
126 |
tttcgcctcttataagttcgaagacacgtcactccaccagagcccccatcaccagaatcaaacccacctgaacttgccaccccattgctaacaccttcac |
225 |
Q |
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| T |
40403451 |
tttcgcctcttataagttcgaagacacgtcactccaccagagcccccatcaccagaatcaaacccacctgaacttgccaccccattgctaacagcttcac |
40403352 |
T |
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| Q |
226 |
ttttcaagactccagcctcttcagtaacaccatttccattcaccccattattcaaaacatcactttttaaaaccacaggcacttcagcaaccccatttcc |
325 |
Q |
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| T |
40403351 |
ttttcaagactccagcctcttcagtaacaccatttccattcaccccattattcaaaacatcactttttaaaaccacaggcacttcagcaaccccatttcc |
40403252 |
T |
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| Q |
326 |
attcgaaaacaccaccccatcattcacagcttcatttatcaattctcgagcctctttagcaacacgacttccattcacaaccannnnnnnatcattcaca |
425 |
Q |
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| T |
40403251 |
attcgaaaacaccaccccatcattcacatcttcacttttcaagactccaacctcttcattaacaccatttccattcgaaaataccgccccatcattcaca |
40403152 |
T |
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| Q |
426 |
gcttcacttgttgattctcgagcctcttcagcaaca |
461 |
Q |
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| T |
40403151 |
gcttcacttatcaattctcgagcctctttagcaaca |
40403116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 318 - 461
Target Start/End: Complemental strand, 40403187 - 40403044
Alignment:
| Q |
318 |
ccatttccattcgaaaacaccaccccatcattcacagcttcatttatcaattctcgagcctctttagcaacacgacttccattcacaaccannnnnnnat |
417 |
Q |
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| T |
40403187 |
ccatttccattcgaaaataccgccccatcattcacagcttcacttatcaattctcgagcctctttagcaacacgacttccattcacaaccacccccccat |
40403088 |
T |
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| Q |
418 |
cattcacagcttcacttgttgattctcgagcctcttcagcaaca |
461 |
Q |
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| T |
40403087 |
catttacagcttcacttgttgattctcgagcctcttcagcaaca |
40403044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 239 - 402
Target Start/End: Complemental strand, 40402987 - 40402829
Alignment:
| Q |
239 |
agcctcttcagtaacaccatttccattcaccccattattcaaaacatcactttttaaaaccacaggcacttcagcaaccccatttccattcgaaaacacc |
338 |
Q |
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| T |
40402987 |
agcctcttcagcaacacaatttccattcaccccattactcaaa------cttttcaaaacctcagctacatcagcaacactatttccattggaaaacact |
40402894 |
T |
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| Q |
339 |
accccatcattcacagcttcatttatc-aattctcgagcctctttagcaacacgacttccattca |
402 |
Q |
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| T |
40402893 |
gccccatcattcacagcttcacttaccggattctcgagcctcttcagcaacacaatttccattca |
40402829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 322 - 461
Target Start/End: Complemental strand, 40403111 - 40402972
Alignment:
| Q |
322 |
ttccattcgaaaacaccaccccatcattcacagcttcatttatcaattctcgagcctctttagcaacacgacttccattcacaaccannnnnnnatcatt |
421 |
Q |
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| T |
40403111 |
ttccattcacaaccacccccccatcatttacagcttcacttgttgattctcgagcctcttcagcaacacaatttccatttgcaaccaccgttctatcatt |
40403012 |
T |
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| Q |
422 |
cacagcttcacttgttgattctcgagcctcttcagcaaca |
461 |
Q |
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| T |
40403011 |
cacagcttcacttatcgattctcgagcctcttcagcaaca |
40402972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 403
Target Start/End: Complemental strand, 40403054 - 40402958
Alignment:
| Q |
307 |
cttcagcaaccccatttccattcgaaaacaccaccccatcattcacagcttcatttatcaattctcgagcctctttagcaacacgacttccattcac |
403 |
Q |
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| T |
40403054 |
cttcagcaacacaatttccatttgcaaccaccgttctatcattcacagcttcacttatcgattctcgagcctcttcagcaacacaatttccattcac |
40402958 |
T |
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