View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15407_low_6 (Length: 447)
Name: NF15407_low_6
Description: NF15407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15407_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 21 - 426
Target Start/End: Complemental strand, 52677204 - 52676799
Alignment:
| Q |
21 |
attatacttaggagaatttacaagtttttccctattatcgatgcaaacaatacctttcatgtatttgaactaaactctttgcatctctattgaattgatc |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52677204 |
attatacttaggagaatttacaagtttttccctattatcgatgcaaacaatacctttcatgtatttgaactaaactctttgcatctctattgaattgatc |
52677105 |
T |
|
| Q |
121 |
atgatgatggtgaggaaggagaagatgaagatggaaaaacatctttaacggcagaagcagcagatagataattaagcgtgtttttcaaagtttccttttc |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
52677104 |
atgatgatggtgaggaaggagaagatgaagatggaaaaacatctttaacggcagaagcagcagatagataattaagcgtatttttcaaagtttccttttc |
52677005 |
T |
|
| Q |
221 |
cctcatcaatcttgcaccagtatcttccaattccagcaaagcttgttgctctctaggtgcaccttcaaaagtgcttccaacnnnnnnnnnnnnnggcgtt |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52677004 |
cctcatcaatcttgcaccagtatcttccaattccagcaaagcttgttgctctctaggtgcaccttcaaaagtgcttccaacaaaaaacgaaaaaggcgtt |
52676905 |
T |
|
| Q |
321 |
gggaataagttccttctcaaatcaccaacttctttctctgcttttccacctaatcgattcgataaccgaatcacgtctttcatatacgtctccacctcgt |
420 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52676904 |
gggaataagttccttctcaaatcaccaacttctttctctgcttttccgcctaatcgattcgataaccgaatcacgtctttcatatacgtctccacctcgt |
52676805 |
T |
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| Q |
421 |
tcgcca |
426 |
Q |
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|||||| |
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| T |
52676804 |
tcgcca |
52676799 |
T |
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