View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_high_10 (Length: 425)
Name: NF15408_high_10
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 55340458 - 55340070
Alignment:
| Q |
18 |
aggaatggtcaagagtggatgtggaacattgaaaagcaacaagaataaattctcccaagttaaaacacccctaaccactctttctaggtactttgtggaa |
117 |
Q |
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| T |
55340458 |
aggaatggtcaagagtggatgtggaacattgaaaagcaacaagaataaattctcccaagataaa-cacccctaaccactctttctaggtactttgtggaa |
55340360 |
T |
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| Q |
118 |
tcttaacttgtgaagcagaaaaaggaaaagttgcctacttatcgatgcactaagaacaaacataaattgacactaaatttttacctctatttgacagacc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55340359 |
tcttaacttgtgaagcagaaaaaggaaaagttgcctacttatctatgcactaagaacaaacataaattgacactaaatttttacctctatttgacagacc |
55340260 |
T |
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| Q |
218 |
aaattaattgaaactgaactcaaaaacgctgagtgctatgagcaagctgcttgcatttcctgcgtttgttgctttgttatcatgacatatctacgaaagt |
317 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55340259 |
aaattaattgaaactgaactcaaaaacgccgagtgctatgagcaagctgcttgcatttcctgcgtttgttgctttgttatcatgacatatctacgaaagt |
55340160 |
T |
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| Q |
318 |
actagttattggcgacaggttctataaaagtgctcatttgacgtctaatatttacactttcctatagtacatactatttcggactgggtc |
407 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
55340159 |
actagttattggcgacagtttctataaaagtgctcatgtgacgtctaatatttacactttgctatagtacatactatttcggactgggtc |
55340070 |
T |
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