View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_high_12 (Length: 422)
Name: NF15408_high_12
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 13734112 - 13733886
Alignment:
| Q |
19 |
gatgctactaatgaaacgatgcttgtttgcttggaaaccgccaactggttgggtaaggacgaacacagatggctcatgcaatcatagaatgtttgatggt |
118 |
Q |
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| T |
13734112 |
gatgctactcatgaaacgatgcttgtttgcttggaaaccgccaactggttgggtaaggacgaacacagatggctcatgcaatcatggaatgtttgatggt |
13734013 |
T |
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| Q |
119 |
tgtgggatcgtttgaattggttgttttgccatgggtctaaggaagtgtagtgcttatatgccaaagttgtggggtgtgtttgaaggttaaggctatgcta |
218 |
Q |
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| T |
13734012 |
tgtgggatcgtttgaattggttgttttgccatgggtctaaggaagtgtagtgcttatatgccaaagttgtggggtgtgtttgaaggttaaggctatgcta |
13733913 |
T |
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| Q |
219 |
gacgcttggggtttcacagtactggag |
245 |
Q |
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| T |
13733912 |
gacgcttggggtttcacagcactggag |
13733886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 279 - 422
Target Start/End: Complemental strand, 13733877 - 13733735
Alignment:
| Q |
279 |
ctctctaacggaatttttggtagtcaagttggtagaactctattgttgaaggttcataaataaaaataatgattcatgtctcatatcatgtaatatacca |
378 |
Q |
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| T |
13733877 |
ctctctaacggaatttttggtagtcaagttggtagagctctattgttgaaggttcataaataaa---aatgattcatgtctcatatcatggaacatacca |
13733781 |
T |
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| Q |
379 |
atgacac--ttgcaaatttcagttgtcctttaaattcaaacatatt |
422 |
Q |
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| T |
13733780 |
atgacacttttgcaaatttcagttgtcctttaacttcaaacatatt |
13733735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 23461141 - 23461101
Alignment:
| Q |
164 |
tgtagtgcttatatgccaaagttgtggggtgtgtttgaagg |
204 |
Q |
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| T |
23461141 |
tgtagtgcttatgtggcagagttgtggggtgtgtttgaagg |
23461101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 204
Target Start/End: Complemental strand, 22822702 - 22822662
Alignment:
| Q |
164 |
tgtagtgcttatatgccaaagttgtggggtgtgtttgaagg |
204 |
Q |
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| T |
22822702 |
tgtagtgcttatgtggcagagttgtggggtgtgtttgaagg |
22822662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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