View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15408_high_13 (Length: 400)
Name: NF15408_high_13
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 27250287 - 27250132
Alignment:
| Q |
17 |
cagagatatagtctccaagagatggaactgtcacaagaagggtacgccatgcttgacggttagcttcagtgttttctagcccaattgaagccaaacgctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27250287 |
cagagatatagtctccaagagatggaactgtcacaagaagggtacgccatgcttggcggttagcttcagtgttttctagcccaattgaagccaaacgctt |
27250188 |
T |
|
| Q |
117 |
tccacatgtagcattggattcatccatggctaaaataccacgccctggtgaagcaa |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27250187 |
tccacatgtagcattggattcatccatggctaaaataccacgccctggtgaagcaa |
27250132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 21194514 - 21194359
Alignment:
| Q |
17 |
cagagatatagtctccaagagatggaactgtcacaagaagggtacgccatgcttgacggttagcttcagtgttttctagcccaattgaagccaaacgctt |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21194514 |
cagagatatagtctccaagagatggaactgtcacaagaagggtacgccatgcttggcggttagcttcagtgttttctagcccaattgaagccaaacgctt |
21194415 |
T |
|
| Q |
117 |
tccacatgtagcattggattcatccatggctaaaataccacgccctggtgaagcaa |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21194414 |
tccacatgtagcattggattcatccatggctaaaattccacgccctggtgaagcaa |
21194359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 252 - 381
Target Start/End: Complemental strand, 21194279 - 21194150
Alignment:
| Q |
252 |
tgatgtaaaaacagaattttattattttgagcatagttacttgtcaaaattttaaaaaccattatgtatcacatcacttttaagagtttcaacaaattta |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21194279 |
tgatgtaaaaacagaattttattattttgagcagagttacttgtcaaaattttaaaaaccattatgtatcacatcacttttaagagtttcaacaaattta |
21194180 |
T |
|
| Q |
352 |
caactcagagtccttctccctctatcttag |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
21194179 |
caactcagagtccttctccctctatcttag |
21194150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 253 - 380
Target Start/End: Complemental strand, 27250051 - 27249924
Alignment:
| Q |
253 |
gatgtaaaaacagaattttattattttgagcatagttacttgtcaaaattttaaaaaccattatgtatcacatcacttttaagagtttcaacaaatttac |
352 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
27250051 |
gatgtaaaaagagaattttattattttgagcagagttacttgtcaaaattttaaaaaccattatgtatcacatcagttttaagagtttcaacaaatttac |
27249952 |
T |
|
| Q |
353 |
aactcagagtccttctccctctatctta |
380 |
Q |
| |
|
||||||||||| |||||||||||||||| |
|
|
| T |
27249951 |
aactcagagtcattctccctctatctta |
27249924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 172
Target Start/End: Complemental strand, 27262116 - 27261961
Alignment:
| Q |
17 |
cagagatatagtctccaagagatggaactgtcacaagaagggtacgccatgcttgacggttagcttcagtgttttctagcccaattgaagccaaacgctt |
116 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||||| |||||||||||| | |||||| |||| ||||| |||||||||||||||||||||| || |
|
|
| T |
27262116 |
cagagatgtactctccaagagatggaactgtcaccagaagagtacgccatgctgggcggttaacttcggtgttctctagcccaattgaagccaaactttt |
27262017 |
T |
|
| Q |
117 |
tccacatgtagcattggattcatccatggctaaaataccacgccctggtgaagcaa |
172 |
Q |
| |
|
||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
27262016 |
cccacaagtagcattggactcatccatggccaaaataccacgtcctggtgaagcaa |
27261961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University