View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15408_high_14 (Length: 372)

Name: NF15408_high_14
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15408_high_14
NF15408_high_14
[»] chr1 (8 HSPs)
chr1 (1-372)||(51807581-51807942)
chr1 (25-175)||(51772022-51772170)
chr1 (1-162)||(51779881-51780046)
chr1 (270-372)||(51803887-51803989)
chr1 (103-163)||(51803793-51803853)
chr1 (299-372)||(51772294-51772367)
chr1 (297-346)||(51761302-51761351)
chr1 (299-372)||(51780160-51780233)
[»] scaffold0710 (2 HSPs)
scaffold0710 (1-162)||(6523-6688)
scaffold0710 (299-372)||(6802-6875)


Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 51807581 - 51807942
Alignment:
Q  1 atcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgctttattgtttcaggtttaacaaattcgaacaagaaaagacttg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51807581 atcatgaatatcaaatttcgctaagtattgatggttttaccaacata----gagtgctttattgtttcaggtttaacaaattcgaacaagaaaagacttg 51807676  T
Q  101 ctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcctagatatatggtataatatacgaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51807677 ctaggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcctagatatatggtataatatacgaaa 51807776  T
Q  201 accattttccatttctgtgtagtatctatatcagcttaactcctcttgcagttgctagttgagttgcgcgtatctaattctatttgcataactctgaaaa 300  Q
    ||||||||||||||||||||||||||||||||||||| |||||||      |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  51807777 accattttccatttctgtgtagtatctatatcagctttactcctc------ttgctagttgagttgcgcatatctaattctatttgcataactctgaaaa 51807870  T
Q  301 atttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattctt 372  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  51807871 atttcagtgagagttggagcaaacatatctaaaacaataaagagaactttgagcttaggggctcaaattctt 51807942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 25 - 175
Target Start/End: Original strand, 51772022 - 51772170
Alignment:
Q  25 gtattgatggttttaccaacatatatagagtgcttt--attgtttcaggtttaacaaattcgaacaagaaaagacttgctaggaaggctgatagtctctc 122  Q
    |||||||||||||||||||    |||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  51772022 gtattgatggttttaccaa----tatagagtgctttttattgtttcaggtttaacaaattcgaacaagaaaaggcttgctagaaaggctgatagtctctc 51772117  T
Q  123 acaaagagtccaagaacacggtgagtacccttgtaagacttagatgtgtttcc 175  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||||||||||    
T  51772118 acaaaaagtccaagaacatggtgagtacccttgtaagactgagatgtgtttcc 51772170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 51779881 - 51780046
Alignment:
Q  1 atcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgctttattgtttcaggtttaacaaattcgaacaagaaaagactt- 99  Q
    |||||||| ||| |||||||||| |||||||  ||||||||||    |||||||||||||||||||||||||||||||||||| ||||||||||| |||     
T  51779881 atcatgaacatctaatttcgctaggtattgaatgttttaccaa----tatagagtgctttattgtttcaggtttaacaaattcaaacaagaaaaggcttg 51779976  T
Q  100 ---gctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact 162  Q
       |||||||||||||||||||||||||||| |||||||||||| |    ||||||||||||||||||||    
T  51779977 ctagctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact 51780046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 270 - 372
Target Start/End: Original strand, 51803887 - 51803989
Alignment:
Q  270 gtatctaattctatttgcataactctgaaaaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaatt 369  Q
    |||||||||||| |||  |||||||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  51803887 gtatctaattctctttatataactctgaaaaatttcagtgagatcgggagcaaacatatctaaaacaataaagaggacgttgaacttaggggctcaaatt 51803986  T
Q  370 ctt 372  Q
    |||    
T  51803987 ctt 51803989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 51803793 - 51803853
Alignment:
Q  103 aggaaggctgatagtctctcacaaagagtccaagaacacggtgagtacccttgtaagactt 163  Q
    |||||||| |||||||||||||||||||| |||||||| |||||||||||| |||||||||    
T  51803793 aggaaggccgatagtctctcacaaagagttcaagaacatggtgagtaccctagtaagactt 51803853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 51772294 - 51772367
Alignment:
Q  299 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattctt 372  Q
    |||||||||| ||| || |||||||||| ||| ||||||| ||||| |  ||||||||||||||||||||||||    
T  51772294 aaatttcagtaagacttagagcaaacatttctgaaacaattaagagaaaattgagcttaggggctcaaattctt 51772367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 297 - 346
Target Start/End: Original strand, 51761302 - 51761351
Alignment:
Q  297 aaaaatttcagtgagagttggagcaaacatatctaaaacaataaagagga 346  Q
    |||||||||||||||||| |||| |||||||||  |||||||||||||||    
T  51761302 aaaaatttcagtgagagtgggagaaaacatatcagaaacaataaagagga 51761351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 51780160 - 51780233
Alignment:
Q  299 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattctt 372  Q
    |||||||| | ||| | ||||||||||| ||| ||||||||| |||||  ||||||||||||||| ||||||||    
T  51780160 aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctt 51780233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 6523 - 6688
Alignment:
Q  1 atcatgaatatcaaatttcgctaagtattgatggttttaccaacatatatagagtgctttattgtttcaggtttaacaaattcgaacaagaaaagactt- 99  Q
    ||||||||||||||||||||||| |||||||  ||||||||||    |||||||||||||||||||||||||||||||||||| ||||||||||| |||     
T  6523 atcatgaatatcaaatttcgctaggtattgaatgttttaccaa----tatagagtgctttattgtttcaggtttaacaaattcaaacaagaaaaggcttg 6618  T
Q  100 ---gctaggaaggctgatagtctctcacaaagagtccaagaacacg----gtgagtacccttgtaagact 162  Q
       |||||||||||||||||||||||||||| |||||||||||| |    ||||||||||||||||||||    
T  6619 ctagctaggaaggctgatagtctctcacaaaaagtccaagaacatggtgagtgagtacccttgtaagact 6688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 299 - 372
Target Start/End: Original strand, 6802 - 6875
Alignment:
Q  299 aaatttcagtgagagttggagcaaacatatctaaaacaataaagaggactttgagcttaggggctcaaattctt 372  Q
    |||||||| | ||| | ||||||||||| ||| ||||||||| |||||  ||||||||||||||| ||||||||    
T  6802 aaatttcattaagactgggagcaaacatttctgaaacaataaggaggaagttgagcttaggggctaaaattctt 6875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University