View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15408_high_19 (Length: 348)

Name: NF15408_high_19
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15408_high_19
NF15408_high_19
[»] chr5 (24 HSPs)
chr5 (48-264)||(11496080-11496295)
chr5 (48-264)||(11532990-11533205)
chr5 (48-264)||(11563341-11563556)
chr5 (48-264)||(11503407-11503622)
chr5 (48-264)||(11518177-11518392)
chr5 (48-264)||(11525582-11525797)
chr5 (48-264)||(11510801-11511016)
chr5 (48-264)||(11540434-11540649)
chr5 (13-50)||(11496324-11496361)
chr5 (13-50)||(11503651-11503688)
chr5 (13-50)||(11511045-11511082)
chr5 (13-50)||(11518421-11518458)
chr5 (13-50)||(11525826-11525863)
chr5 (13-50)||(11533234-11533271)
chr5 (13-50)||(11540678-11540715)
chr5 (13-50)||(11563585-11563622)
chr5 (123-158)||(11496288-11496323)
chr5 (123-158)||(11503615-11503650)
chr5 (123-158)||(11511009-11511044)
chr5 (123-158)||(11518385-11518420)
chr5 (123-158)||(11525790-11525825)
chr5 (123-158)||(11533198-11533233)
chr5 (123-158)||(11540642-11540677)
chr5 (123-158)||(11563549-11563584)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 11496295 - 11496080
Alignment:
Q  48 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11496295 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11496196  T
Q  148 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacnnnnnnnggaggttgtttttcgtgaatactttct 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||    
T  11496195 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacaaaaaaaggaggttgtttttcgtgaatac-ttct 11496097  T
Q  248 tttgatgagctaattgg 264  Q
     ||||||||||||||||    
T  11496096 cttgatgagctaattgg 11496080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 11533205 - 11532990
Alignment:
Q  48 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11533205 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11533106  T
Q  148 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacnnnnnnnggaggttgtttttcgtgaatactttct 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||    
T  11533105 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacaaaaaaaggaggttgtttttcgtgaatac-ttct 11533007  T
Q  248 tttgatgagctaattgg 264  Q
     ||||||||||||||||    
T  11533006 cttgatgagctaattgg 11532990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 11563556 - 11563341
Alignment:
Q  48 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11563556 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11563457  T
Q  148 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacnnnnnnnggaggttgtttttcgtgaatactttct 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||    
T  11563456 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacaaaaaaaggaggttgtttttcgtgaatac-ttct 11563358  T
Q  248 tttgatgagctaattgg 264  Q
     ||||||||||||||||    
T  11563357 cttgatgagctaattgg 11563341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 11503622 - 11503407
Alignment:
Q  48 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 147  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11503622 aggaagagcaagtgtatgttcctaaactcatatttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11503523  T
Q  148 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacnnnnnnnggaggttgtttttcgtgaatactttct 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||    
T  11503522 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacaaaaaaaggaggttgtttttcgtgaatac-ttct 11503424  T
Q  248 tttgatgagctaattgg 264  Q
     ||||||||||||||||    
T  11503423 cttgatgagctaattgg 11503407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 11518392 - 11518177
Alignment:
Q  48 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 147  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11518392 aggaagagcaagtgtatgttcctaaactcatatttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11518293  T
Q  148 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacnnnnnnnggaggttgtttttcgtgaatactttct 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||    
T  11518292 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacaaaaaaaggaggttgtttttcgtgaatac-ttct 11518194  T
Q  248 tttgatgagctaattgg 264  Q
     ||||||||||||||||    
T  11518193 cttgatgagctaattgg 11518177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 11525797 - 11525582
Alignment:
Q  48 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 147  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11525797 aggaagagcaagtgtatgttcctaaactcatatttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11525698  T
Q  148 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacnnnnnnnggaggttgtttttcgtgaatactttct 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||    
T  11525697 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacaaaaaaaggaggttgtttttcgtgaatac-ttct 11525599  T
Q  248 tttgatgagctaattgg 264  Q
     ||||||||||||||||    
T  11525598 cttgatgagctaattgg 11525582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 11511016 - 11510801
Alignment:
Q  48 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 147  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11511016 aggaagagcaagtgtatgttcctaaactcatatttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 11510917  T
Q  148 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacnnnnnnnggaggttgtttttcgtgaatactttct 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||    
T  11510916 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacaaaaaaaggaggttgtttttcgtgaatac-ttct 11510818  T
Q  248 tttgatgagctaattgg 264  Q
     ||| ||||||||||||    
T  11510817 cttgctgagctaattgg 11510801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 48 - 264
Target Start/End: Complemental strand, 11540649 - 11540434
Alignment:
Q  48 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcatcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttaattggtt 147  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11540649 aggaagagcaagtgtatgttcctaaactcatacttttcttgattcgtcaacttgtcaactccaccaggcccctttgcttgtcaaccttatttcattggtt 11540550  T
Q  148 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacnnnnnnnggaggttgtttttcgtgaatactttct 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||    
T  11540549 aacaggaagagtgactaacgtgaccaacccttttgtcagcctccatagtcactcttcctgctaaacaaaaaaaggaggttgtttttcgtgaatac-ttct 11540451  T
Q  248 tttgatgagctaattgg 264  Q
     |||||||| |||||||    
T  11540450 cttgatgaggtaattgg 11540434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 11496361 - 11496324
Alignment:
Q  13 aatatatctataaatattatcataatcagatgcaaagg 50  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11496361 aatatatctacaaatattatcataatcagatgcaaagg 11496324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 11503688 - 11503651
Alignment:
Q  13 aatatatctataaatattatcataatcagatgcaaagg 50  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11503688 aatatatctacaaatattatcataatcagatgcaaagg 11503651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 11511082 - 11511045
Alignment:
Q  13 aatatatctataaatattatcataatcagatgcaaagg 50  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11511082 aatatatctacaaatattatcataatcagatgcaaagg 11511045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 11518458 - 11518421
Alignment:
Q  13 aatatatctataaatattatcataatcagatgcaaagg 50  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11518458 aatatatctacaaatattatcataatcagatgcaaagg 11518421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 11525863 - 11525826
Alignment:
Q  13 aatatatctataaatattatcataatcagatgcaaagg 50  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11525863 aatatatctacaaatattatcataatcagatgcaaagg 11525826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 11533271 - 11533234
Alignment:
Q  13 aatatatctataaatattatcataatcagatgcaaagg 50  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11533271 aatatatctacaaatattatcataatcagatgcaaagg 11533234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 11540715 - 11540678
Alignment:
Q  13 aatatatctataaatattatcataatcagatgcaaagg 50  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11540715 aatatatctacaaatattatcataatcagatgcaaagg 11540678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 11563622 - 11563585
Alignment:
Q  13 aatatatctataaatattatcataatcagatgcaaagg 50  Q
    |||||||||| |||||||||||||||||||||||||||    
T  11563622 aatatatctacaaatattatcataatcagatgcaaagg 11563585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 11496323 - 11496288
Alignment:
Q  123 gcttgtcaaccttatttaattggttaacaggaagag 158  Q
    |||||||||||||||||||||| |||||||||||||    
T  11496323 gcttgtcaaccttatttaattgtttaacaggaagag 11496288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 11503650 - 11503615
Alignment:
Q  123 gcttgtcaaccttatttaattggttaacaggaagag 158  Q
    |||||||||||||||||||||| |||||||||||||    
T  11503650 gcttgtcaaccttatttaattgtttaacaggaagag 11503615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 11511044 - 11511009
Alignment:
Q  123 gcttgtcaaccttatttaattggttaacaggaagag 158  Q
    |||||||||||||||||||||| |||||||||||||    
T  11511044 gcttgtcaaccttatttaattgtttaacaggaagag 11511009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 11518420 - 11518385
Alignment:
Q  123 gcttgtcaaccttatttaattggttaacaggaagag 158  Q
    |||||||||||||||||||||| |||||||||||||    
T  11518420 gcttgtcaaccttatttaattgtttaacaggaagag 11518385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 11525825 - 11525790
Alignment:
Q  123 gcttgtcaaccttatttaattggttaacaggaagag 158  Q
    |||||||||||||||||||||| |||||||||||||    
T  11525825 gcttgtcaaccttatttaattgtttaacaggaagag 11525790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 11533233 - 11533198
Alignment:
Q  123 gcttgtcaaccttatttaattggttaacaggaagag 158  Q
    |||||||||||||||||||||| |||||||||||||    
T  11533233 gcttgtcaaccttatttaattgtttaacaggaagag 11533198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 11540677 - 11540642
Alignment:
Q  123 gcttgtcaaccttatttaattggttaacaggaagag 158  Q
    |||||||||||||||||||||| |||||||||||||    
T  11540677 gcttgtcaaccttatttaattgtttaacaggaagag 11540642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 123 - 158
Target Start/End: Complemental strand, 11563584 - 11563549
Alignment:
Q  123 gcttgtcaaccttatttaattggttaacaggaagag 158  Q
    |||||||||||||||||||||| |||||||||||||    
T  11563584 gcttgtcaaccttatttaattgtttaacaggaagag 11563549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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