View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_high_27 (Length: 301)
Name: NF15408_high_27
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 10 - 209
Target Start/End: Original strand, 169785 - 169984
Alignment:
| Q |
10 |
attattctcctcagaaggaggcttcatcatccaaatgtcatcaaacttgaagggatcataccttgtacctcatttttgaatatatggtaacttggcgggc |
109 |
Q |
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| T |
169785 |
attattctcctcagaaggaggcttcatcatccaaatgtcatcaaacttgaagggagcataccttgtacctcatttttgaatatatggtaacttggcgggc |
169884 |
T |
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| Q |
110 |
attgttgcaaggccagtaaaatgacatgtattatttgctgaatgtgattgattacaagggtttcccctctaacccccagagcaagctgagaagaattccc |
209 |
Q |
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| T |
169885 |
attgttgcaaggccagtaaaatgaaatgtattatttgctgaatgtgattgattacaagggtttcccctctaacccccagagcaagctgagaagaattccc |
169984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 285
Target Start/End: Original strand, 169984 - 170015
Alignment:
| Q |
254 |
ccttctacctacccatcatctcattccaccct |
285 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
169984 |
ccttctacctacccatcatctcattccaccct |
170015 |
T |
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