View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_high_3 (Length: 553)
Name: NF15408_high_3
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 8 - 538
Target Start/End: Original strand, 2926252 - 2926772
Alignment:
| Q |
8 |
gaagcaaaggagtgaatgcaaaatagttacgaggcgaaaccacctgtacttcatactttggactgtccagattcttcataaaacttgttgccgcccatcc |
107 |
Q |
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| T |
2926252 |
gaagcaaaggagtgaatgcaaaatagttacgaggcgaaaccacctgtacttcatactttggactgtccagattcttcataaaacttgttgccgcccatcc |
2926351 |
T |
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| Q |
108 |
tgttcccaacaccaccacttttttcctatcggtaaccgcctccacttccgatggataaaactcgcgatatgccacataaccaacaccactgcatcaacca |
207 |
Q |
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| T |
2926352 |
tgttcccagcaccaccacttttttcctatcggtaaccgcctccacttccgatggataaaactcgcgatatgccacataaccaacaccactgcatcaacca |
2926451 |
T |
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| Q |
208 |
cacacgcacacaaaacacatcaaatattt-tataatcacatatatatcgcaagactatgcagcatagacacagac-----acagacgcatcgacaacatt |
301 |
Q |
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| T |
2926452 |
ca----cacacaaaacacatcaaatatttgtataatcacatatatatcgcaagactatgcatcatagacacagacacgcaacagacgcatcgacaacatt |
2926547 |
T |
|
| Q |
302 |
atgtacaagtcttcgattaaaagtgtcgctgatacagagatcaaacagatctacgtctaggcaatgtattaaaattttaattgcaaaggaaaacgcctta |
401 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2926548 |
atgtacaagtcttccattaaaagtgtcgctgatacagagatcaaacagatctacgtctaggcaatgtattaaaattttaattgcaaaggaaaacgcctta |
2926647 |
T |
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| Q |
402 |
aaattttataaactaaaacagagcatgtatnnnnnnngcgcatgattattgtagtaaatgtgaacatagaatataatcgagatattatttgtaaataaat |
501 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2926648 |
aaattttataaactaaaacagagca------------gcacatgattattgtagtaaatgtgaacatagaatataatcgacatattatttgtaaataaat |
2926735 |
T |
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| Q |
502 |
gtttagatctaactttttagattaataaactacatga |
538 |
Q |
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| T |
2926736 |
gtttagatctaactttttagattaataaactacatga |
2926772 |
T |
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