View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_high_33 (Length: 256)
Name: NF15408_high_33
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_high_33 |
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Alignment Details
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 5923634 - 5923393
Alignment:
| Q |
1 |
aatatggtggagatacaagacaacaaagcaatatagaagtgaagcaaaacgacatgaaacaaggcaagcaacaacaatgtcgtggtataaatttagtggt |
100 |
Q |
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| T |
5923634 |
aatatggtggagatacaagacaacaaagcaatatagaagtgaagcaaaacgacatgaaacaaggcaagcaacaacaatgtcgtggtataaatttagtggt |
5923535 |
T |
|
| Q |
101 |
gatataacgttacacgacatttaaatgaagcaactcactcatcttatagttgaatcaatgtagatgtggtatgatatattatttggttacattacatggt |
200 |
Q |
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| T |
5923534 |
gatataacgttacacgacatttaaatgaagcaacacactcatcttaaagtggaa--------------gtatgatatattatttggttacattacattgt |
5923449 |
T |
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| Q |
201 |
aatggtaatgat-atgatgaggtgaggtacatatattcttgtaataataagtgaat |
255 |
Q |
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|||||||||| | ||||| | |||||||||||||||||||||||||||||||||| |
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| T |
5923448 |
aatggtaatggtaatgatatgatgaggtacatatattcttgtaataataagtgaat |
5923393 |
T |
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