View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_high_38 (Length: 240)
Name: NF15408_high_38
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_high_38 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 41482538 - 41482318
Alignment:
| Q |
1 |
aatagcttgtacataaagtgactaaaatagaaagtagatgatactattatcatgagtgtatgaattgaagttataacataatgattatccttatgctttt |
100 |
Q |
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| T |
41482538 |
aatagcttgtacataaagtgactaaaatagaaagtagatgatactattatcatgagtgtatgaattaaagttataacataatgattatccttatgctttt |
41482439 |
T |
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| Q |
101 |
tattcatttgctcaaagttatactaaaacagaataaagagattatgaagcagtatgagatattaagaaaaactgta-aaaagaaactcagattccaccgt |
199 |
Q |
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| T |
41482438 |
tattcatttgctcaaagttatactaaaacagaataaagagattatgaagcagtatgagatattaagaaaaactgtaaaaaagaaactcagattccaccgt |
41482339 |
T |
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| Q |
200 |
tttgaacaaaaatgcgaaaca |
220 |
Q |
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| T |
41482338 |
tttgaacaaaaatgcaaaaca |
41482318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 106
Target Start/End: Original strand, 16410285 - 16410368
Alignment:
| Q |
23 |
taaaatagaaagtagatgatactattatcatgagtgtatgaattgaagttataacataatgattatccttatgctttttattca |
106 |
Q |
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| T |
16410285 |
taaaatacaaagtagatgatgtaattattatgagtttatgaattaaaatgataacattatcattgtccttatgctttttattca |
16410368 |
T |
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