View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_high_4 (Length: 537)
Name: NF15408_high_4
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 13 - 537
Target Start/End: Complemental strand, 2234065 - 2233540
Alignment:
| Q |
13 |
gaaatgaaaggtgcatcaatcatcatcatcctatttagttggggaaaggaatttcaaaatgttggtgccgatagaagagtgaaagcatggcacgtcgaaa |
112 |
Q |
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| T |
2234065 |
gaaatgaaaggtgcatcaatcatcatcgtcctatttagttggggaaaggaatttcaaaatgttggtgccgatagaagagtgaaagcatggcacgtcgaaa |
2233966 |
T |
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| Q |
113 |
ttgaaggataagaaaaagaaatggcattgtaatgataagggaccttagaaaaagattnnnnnnnn-tataagagacgtgagtgagcccctcacatggaca |
211 |
Q |
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| T |
2233965 |
ttgaaggataagaaaaagaaatggcgttgtaatgataagggaccttagaaaaagattaaaaaataatataagagacgtgagtgagcccctcacatggaca |
2233866 |
T |
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| Q |
212 |
ttaattggatagataggacccattttataagacatttggggacagagtaggtaacttggtcacaagctttcgaccacaaaaacttctgttgttgccactc |
311 |
Q |
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| T |
2233865 |
ttaattggatagataggacccattttataagacatttggggacagagtaggtgacttggtcacaagctttcgaccacaaaaacttctgttgttgccactc |
2233766 |
T |
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| Q |
312 |
tgcttgatgggtattacgttagcaaatacatcactgtttcaattatacatgatacatacatgcatgcctttcaaaaatctgtataacattgatttcgtct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2233765 |
tgcttgatgggtattacgttagcaaatacatcactgtttcaattatacatgatacatacatgcatgcctttcaaaaatctgtataacattgatttcgtct |
2233666 |
T |
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| Q |
412 |
ctcaatattttgaaatatttttctaagattatacacctacaaaatttccacgagactgatctgtgtatatctgtattgattatgtttgctggaatcacat |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2233665 |
ctcaatattttgaaatatttttctaagattatacacctacaaaatttccatgagactgatctgtgtatatctgtattgattatgtttgctggaatcacat |
2233566 |
T |
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| Q |
512 |
tgtactacgtttgttttgaggaaatt |
537 |
Q |
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| T |
2233565 |
tgtactacgtttgttttgaggaaatt |
2233540 |
T |
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