View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15408_high_40 (Length: 238)
Name: NF15408_high_40
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_high_40 |
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| [»] chr7 (4 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 16 - 234
Target Start/End: Complemental strand, 27188110 - 27187892
Alignment:
| Q |
16 |
tcacactgggccaacgtgagttaactcaagcaggtgtaaagcccgcgtgatttaaatcacacaggtgtaatgcccaattttcaaatttcgtgccaannnn |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27188110 |
tcacactgggccaacgtgagttaactcaagcaggtgtaaagcccgcgtgatttaaatcacacaggtgtaatgcccaattttcaaatttcgcgccaatttt |
27188011 |
T |
|
| Q |
116 |
nnnctttgttagcttgttgcacaaattatttatattatttttccttgttattttgtcattcaatacacatagtgatggctgtaagtatggtggatgatga |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
27188010 |
tttctttgttagcttgttgcacaaattatttatattatttttccttgttattttgtcattcaatacacatagtgatggctgtaaatatggtggatgatga |
27187911 |
T |
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| Q |
216 |
cgttgagccgaaaccggcc |
234 |
Q |
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||||||||||||||||||| |
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| T |
27187910 |
cgttgagccgaaaccggcc |
27187892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 228
Target Start/End: Original strand, 14190034 - 14190144
Alignment:
| Q |
119 |
ctttgttagcttgttgcacaaattatttatattatttt-tccttgttattttgtcattcaatacacatagtgatggctgtaagtatggtggatgatgacg |
217 |
Q |
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||||||||||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||| ||||| |||||| || || | |||| |||||||| | |
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| T |
14190034 |
ctttgttagcttgttacacaagttatttatattattttttccttgttattttgttattcaatagacataatgatggttgaaaatgtggttgatgatgaag |
14190133 |
T |
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| Q |
218 |
ttgagccgaaa |
228 |
Q |
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||||||||||| |
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| T |
14190134 |
ttgagccgaaa |
14190144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 5e-46; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 24 - 238
Target Start/End: Complemental strand, 23562215 - 23562001
Alignment:
| Q |
24 |
ggccaacgtgagttaactcaagcaggtgtaaagcccgcgtgatttaaatcacacaggtgtaatgcccaattttcaaatttcgtgccaannnnnnnctttg |
123 |
Q |
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||||||||||| |||||||| | |||||||| ||| | |||| || | |||| || ||||||||||| |||||||||||| ||| ||| ||| |
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| T |
23562215 |
ggccaacgtgatttaactcacgaaggtgtaatgccagtgtgactttagtcacgcacgtgtaatgccctattttcaaattttgtgtcaatttttttcttcc |
23562116 |
T |
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| Q |
124 |
ttagcttgttgcacaaattatttatattatttttccttgttattttgtcattcaatacacatagtgatggctgtaagtatggtggatgatgacgttgagc |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| || || | ||| |||||||| ||||||| |
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| T |
23562115 |
ttagcttgttgcacaaattatttatattatttttccttgttattttgttattcaatagacatagtgatggttgaaaatgtggcggatgatggtgttgagc |
23562016 |
T |
|
| Q |
224 |
cgaaaccggccataa |
238 |
Q |
| |
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||||||||||||||| |
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| T |
23562015 |
cgaaaccggccataa |
23562001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 124 - 238
Target Start/End: Complemental strand, 13070262 - 13070146
Alignment:
| Q |
124 |
ttagcttgttgcacaaattatttatattatttttccttgttattttgtcattcaatacacatagtg--atggctgtaagtatggtggatgatgacgttga |
221 |
Q |
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||||||||||||||| | |||||| | ||||||||||||||||||| |||||||| |||||||| | || || || | ||| ||||||||||||||| |
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| T |
13070262 |
ttagcttgttgcacatgtaatttatttattttttccttgttattttgttattcaatagacatagtggtagggttgaaaatgtggcggatgatgacgttga |
13070163 |
T |
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| Q |
222 |
gccgaaaccggccataa |
238 |
Q |
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|||||||||||||||| |
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| T |
13070162 |
accgaaaccggccataa |
13070146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 187
Target Start/End: Complemental strand, 2369456 - 2369396
Alignment:
| Q |
127 |
gcttgttgcacaaattatttatattatttttccttgttattttgtcattcaatacacatag |
187 |
Q |
| |
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||||| |||||||||||||||| | ||||||||||||||||| | |||||||| |||||| |
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| T |
2369456 |
gcttgctgcacaaattatttatttattttttccttgttatttttttattcaatagacatag |
2369396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 214
Target Start/End: Original strand, 2834971 - 2835065
Alignment:
| Q |
119 |
ctttgttagcttgttgcacaaattatttatattatttttccttgttattttgtc-attcaatacacatagtgatggctgtaagtatggtggatgatg |
214 |
Q |
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|||| ||||||||||| | || ||||||||||| |||||||||||||||| | ||||||| |||||||||||| || || | |||||||||||| |
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| T |
2834971 |
ctttcttagcttgttgtataagttatttatatt--ttttccttgttattttttttattcaattgacatagtgatggttgaaaatgtggtggatgatg |
2835065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 6599167 - 6599048
Alignment:
| Q |
119 |
ctttgttagcttgttgcacaaattatttatattatttttccttgttattttgtcattcaatacacatagtgatggctgtaagtatggtggatgatgacgt |
218 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| | |||||||||| || || | ||| ||||||| || |
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| T |
6599167 |
ctttgttagcttgttgcacaagttatttatattatttttccttgttattttgtttttcaatagatatagtgatggttgaaaatgtggctgatgatggtgt |
6599068 |
T |
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| Q |
219 |
tgagccgaaaccggccataa |
238 |
Q |
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| |||||||| ||| ||||| |
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| T |
6599067 |
taagccgaaatcggtcataa |
6599048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 30528837 - 30528956
Alignment:
| Q |
119 |
ctttgttagcttgttgcacaaattatttatattatttttccttgttattttgtcattcaatacacatagtg--atggctgtaagtatggtggatgatgac |
216 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |||||||| |||||||| |||| || || | |||| ||||||| | |
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| T |
30528837 |
ctttgttagcttgttgcacaagttatttat-ttatttt-ccttgttattttgttattcaatagacatagtgatatggttgaaaatgtggtagatgatggc |
30528934 |
T |
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| Q |
217 |
gttgagccgaaaccggccataa |
238 |
Q |
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|||||||| ||||||||||||| |
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| T |
30528935 |
gttgagcccaaaccggccataa |
30528956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 14218853 - 14218744
Alignment:
| Q |
127 |
gcttgttgcacaaattatttatattatttttccttgttattttgtcattcaatacacatagtgatggctgtaagtatggtggatgatgacgttgagccga |
226 |
Q |
| |
|
||||||| |||||| ||||||||| |||||||||| ||||||||| |||||||| ||||| || ||| || || | |||| ||||||| |||||||| || |
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| T |
14218853 |
gcttgttacacaaactatttatat-atttttccttattattttgttattcaatagacatattggtggttgaaaatgtggt-gatgatggcgttgagctga |
14218756 |
T |
|
| Q |
227 |
aaccggccataa |
238 |
Q |
| |
|
|||||||||||| |
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| T |
14218755 |
aaccggccataa |
14218744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 119 - 238
Target Start/End: Complemental strand, 15234859 - 15234742
Alignment:
| Q |
119 |
ctttgttagcttgttgcacaaattatttatattatttttccttgttattttgtcattcaatacacatagtg--atggctgtaagtatggtggatgatgac |
216 |
Q |
| |
|
|||||||||||||||||| || || ||||| ||||||||||||||||||| |||||||| |||||||| |||| || || | ||| |||||||| | |
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| T |
15234859 |
ctttgttagcttgttgcataagttttttat----tttttccttgttattttgttattcaatagacatagtgatatggttgaaaatgtggcggatgatggc |
15234764 |
T |
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| Q |
217 |
gttgagccgaaaccggccataa |
238 |
Q |
| |
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||||| ||||||| |||||||| |
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| T |
15234763 |
gttgacccgaaactggccataa |
15234742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 124 - 238
Target Start/End: Original strand, 19988033 - 19988146
Alignment:
| Q |
124 |
ttagcttgttgcacaaattatttatattatttttccttgttattttgtcattcaatacacatagtgatggctgtaagtatggtggatgatgacgttgagc |
223 |
Q |
| |
|
||||||||||||| || ||||||||||| ||||||||| ||| ||| | |||||||| |||||||||||| || || | | |||||||||| |||||| | |
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| T |
19988033 |
ttagcttgttgcataagttatttatatt-tttttccttattacttttttattcaatagacatagtgatggttgaaaatgttgtggatgatggcgttgaac |
19988131 |
T |
|
| Q |
224 |
cgaaaccggccataa |
238 |
Q |
| |
|
| |||||| |||||| |
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|
| T |
19988132 |
caaaaccgaccataa |
19988146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 41635121 - 41635023
Alignment:
| Q |
127 |
gcttgttgcacaaattatttatattatttttccttgttattttgtcattcaatacacatagtgatggctgtaagtatggtggatgatgacgttgagccga |
226 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||||||||||| | |||| ||| | ||| |||||| || || | ||||||||||| ||||||||||| |
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|
| T |
41635121 |
gcttgttgcacaagttatttatatt--ttttccttgttatttttt-attctatatatataatgatggttgaaaatgcggtggatgatggcgttgagccga |
41635025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 127 - 236
Target Start/End: Original strand, 11662775 - 11662884
Alignment:
| Q |
127 |
gcttgttgcacaaattatttata-ttatttttccttgttattttgtcattcaatacacatagtgatggctgtaagtatggtggatgatgacgttgagccg |
225 |
Q |
| |
|
||||||||||||| ||||| ||| || |||||||||||||||| | ||||||| | |||||||||| || || | |||||||||||| ||||||||| |
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| T |
11662775 |
gcttgttgcacaagttattcataattttttttccttgttatttctt-attcaatgaatatagtgatggttgaaaatgtggtggatgatggtgttgagccg |
11662873 |
T |
|
| Q |
226 |
aaaccggccat |
236 |
Q |
| |
|
||||||||||| |
|
|
| T |
11662874 |
aaaccggccat |
11662884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 124 - 187
Target Start/End: Original strand, 3368541 - 3368604
Alignment:
| Q |
124 |
ttagcttgttgcacaaattatttatattatttttccttgttattttgtcattcaatacacatag |
187 |
Q |
| |
|
||||||||||| |||| |||||||| | ||||||||||||||||| | |||||||| |||||| |
|
|
| T |
3368541 |
ttagcttgttgtacaagttatttatttattttttccttgttatttttttattcaatagacatag |
3368604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 8356206 - 8356258
Alignment:
| Q |
184 |
atagtgatggctgtaagtatggtggatgatgacgttgagccgaaaccggccat |
236 |
Q |
| |
|
|||||||||| || || |||||||||||||| ||||||| |||||||||||| |
|
|
| T |
8356206 |
atagtgatggttgaaaatatggtggatgatggtgttgagctgaaaccggccat |
8356258 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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