View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_high_45 (Length: 212)
Name: NF15408_high_45
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_high_45 |
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| [»] scaffold0172 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 53415530 - 53415718
Alignment:
| Q |
1 |
ctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttgttttaaatttagagagcatgcaaacatatacttggagctaacttg |
100 |
Q |
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| T |
53415530 |
ctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttgttttaaatttagagagcatgcaaacatatacttggagctaacttg |
53415629 |
T |
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| Q |
101 |
ctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagaaaagaaaagccacctctaacgagttcgg |
189 |
Q |
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| T |
53415630 |
ctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagataagaaaagccacctctaacgagttcgg |
53415718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 53411802 - 53411968
Alignment:
| Q |
2 |
tttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttgtttta----aatttagagagcatgcaaacatatacttggagctaac |
97 |
Q |
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| T |
53411802 |
tttagagtttggaaaccttggtgtaaatgaatttctcgtcactggctcattttattttattttaatttagagggcatgtagacatatacttggattttac |
53411901 |
T |
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| Q |
98 |
ttgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagaaaa |
164 |
Q |
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| T |
53411902 |
ttgctttttaattgtaggcttctttgagggagctgaaaatagatttgaaaagggcaagaaaagaaaa |
53411968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 165
Target Start/End: Complemental strand, 53367008 - 53366843
Alignment:
| Q |
2 |
tttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcatt---ttgttttaaatttagagagcatgcaaacatatacttggagctaact |
98 |
Q |
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| T |
53367008 |
tttagaatttggaaaccttggtgtaaatgaatttcttgtcactggctcattttattttttttaatttagtgggcatg-taacatattcttggatctgact |
53366910 |
T |
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| Q |
99 |
tgctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagaaaag |
165 |
Q |
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| T |
53366909 |
tgctttttaattttaggcttttctgagggagctgaaaatagatttgaaaaaggcaagaaaagaaaag |
53366843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 6 - 165
Target Start/End: Original strand, 53318300 - 53318462
Alignment:
| Q |
6 |
gaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttgttttaaatttagagagcatgcaaacatatacttggagctaact----tgc |
101 |
Q |
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| T |
53318300 |
gaatttggaaacctgggtgtgaatggatttctcgtcactggcttgtattatttgaaatttagagggaaaa-aaccatatacttagagctagctgtcttac |
53318398 |
T |
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| Q |
102 |
tttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaagaaaag |
165 |
Q |
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| T |
53318399 |
tttttaattgtaggcaaattagaaggagctgaaaatagatttagaaagggcaaaaaaacaaaag |
53318462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 5e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 14922958 - 14923115
Alignment:
| Q |
1 |
ctttagaatttggaagccttggtgtgaatgaatttcttgtcactggctcattttgttttaaatttagagagcatgcaaacatatacttggagctaacttg |
100 |
Q |
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| T |
14922958 |
ctttagaatttggaaaccatggtgtggatcaatttctcctcaccggctcattttgtttgaaatttagagggcatgtaaacatatactcgaagctgac--a |
14923055 |
T |
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| Q |
101 |
ctttttaattgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaag |
160 |
Q |
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| T |
14923056 |
ctttgtaattgtaggctcttttgaaggagctgaaaacagattacgacagggcaaaaaaag |
14923115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0172 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0172
Description:
Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 2844 - 2793
Alignment:
| Q |
109 |
ttgtaggctgatttgaagaagctgaaaatagatttggaaagggcaagaaaag |
160 |
Q |
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| T |
2844 |
ttgtaggctgatctgaaggagctgaaagtagatttggacagggcaaggaaag |
2793 |
T |
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