View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15408_high_6 (Length: 532)
Name: NF15408_high_6
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_high_6 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 171 - 532
Target Start/End: Complemental strand, 2530757 - 2530396
Alignment:
| Q |
171 |
cactatgtaaccaagataacataattcaaccctcttctatcatattcatgaattccannnnnnn-gtttatgccatattgcttttccactatgtggtcaa |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2530757 |
cactatgtaaccaagataacataattcaaccctcttctatcatattcatgaattccattttttttgtttatgccatattgcttttccactatgtggtcaa |
2530658 |
T |
|
| Q |
270 |
ggtagaaaatccaccttaaaaagttgnnnnnnnnnnnnnatacaaactcatgttaaaacatgtatggctatgaacatgtttatgtcctatttcaaccctc |
369 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2530657 |
ggtagaaaatccaccttaaaaagttgtttttgtttttt-atacaaactcatgttaaaacatgtatggctatgaacatgtttatgtcctatttcaaccctc |
2530559 |
T |
|
| Q |
370 |
ttctctcttgtttatgaattccatagtt-ttttgctttgcttctttatgatatataaatacctc--ataagaaccaagtagtaatttcacaaggggtggt |
466 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||| |
|
|
| T |
2530558 |
ttctctcttgtttatgaattccatagtttttttgctttgcttctttatgatatataaatacctcatataagaacca---agtaatttcacaaagggtggt |
2530462 |
T |
|
| Q |
467 |
taatgagtttctagtcaaacaattcttccttacatagaagtactagaattcgaaccttgactacaa |
532 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2530461 |
tgatgagtttctagtcaaacaattcttcctcacatagaagtactagaattcgaaccttgactacaa |
2530396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 2530911 - 2530831
Alignment:
| Q |
17 |
ctttcttcatcatgtgtgaaaccaatactcactcatcatgttgaggtaaacttttgttggtcaattcaagtgtcaacaaag |
97 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2530911 |
ctttcttcatcatgtgtgaaaccaagactcactcatcattttgaggtaaacttttgttggtcaattcaagtgtcaacaaag |
2530831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University