View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_high_9 (Length: 472)
Name: NF15408_high_9
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Complemental strand, 2529726 - 2529262
Alignment:
| Q |
1 |
ttgaatcacattctggtaatgttcttctttccacaggtttacaatctccacagccttattggtctatgcaaaatgatatccgcaagatagctaatgaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |
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| T |
2529726 |
ttgaatcacattctggtaatgttcttctttccacaggtttacaatctccacagccttattggtctatgcaaaatgatatccgaaaaatacctaatgaaaa |
2529627 |
T |
|
| Q |
101 |
cggcgacgaggtaaattttgcaactcttgatgcaaattcatggaagttctatgacaaaaggaaatctttgttgtggcaatttattttttctgatgctgca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2529626 |
cggcgacgaggtaaattttgcaactcttgatgcaaattcatggaagttctatgacaaaaggaaatcattgttgtggcaatttattttttctgatgctgca |
2529527 |
T |
|
| Q |
201 |
aatgcaacttggatagcagttttaggaagtgatggcttcataactttcaccaatcttaaaaataaaggctcaagtggttcatcgacaacaagaatacctc |
300 |
Q |
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| T |
2529526 |
aatgcaacttggatagcagttttaggaagtgatggcttcataactttcaccaatcttaaaaataaaggctcaagtggttcatcgacaacaagaatacctc |
2529427 |
T |
|
| Q |
301 |
aagattcttgtagtacaccacaaccttgtggaccttataacatatgcattggtgacaaaaaatgcagttgcccttctgttcttagctccagtcctagttg |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
2529426 |
aagattcttgtagtacaccacaaccttgtggaccttataacatatgcattggtgacaaaaaatgcagttgcccttctgttcttagctccagtcctagctg |
2529327 |
T |
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| Q |
401 |
tgaaccgggttttgtttctccttgtaactcgaaaagttccgttgagcttgttaaaggtgatgatg |
465 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2529326 |
tgaaccgggttttgtttcgccttgtaactcgaaaagttccgttgagcttgttaaaggtgatgatg |
2529262 |
T |
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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 31027917 - 31027961
Alignment:
| Q |
286 |
caacaagaatacctcaagattcttgtagtacaccacaaccttgtg |
330 |
Q |
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||||||||||||| ||||||| |||| |||||||| ||||||||| |
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| T |
31027917 |
caacaagaataccacaagattattgtggtacaccagaaccttgtg |
31027961 |
T |
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