View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_low_13 (Length: 425)
Name: NF15408_low_13
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 42256129 - 42256503
Alignment:
| Q |
20 |
caattaatccacaaagtgagaataaagaccacaatatttctttcaaataatgataatccacaaagatgaataatctaccattttaaagttctttaagatg |
119 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42256129 |
caattagtccacaaagtgagaataaagaccacaatatttctttcaaataatgataatccacaaagatgaataatctaccattttaaagttctttaagatg |
42256228 |
T |
|
| Q |
120 |
ctactaatttctcaaattccctgatattcgtctagctcaattcaaataagccaatatcacaagaatcatgtaattagtattatatatttgatgactccaa |
219 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42256229 |
ctactaatttctcaaattcccttatattcgtctagctcaattcaaataagccaatatcacaagaatcatgtaattaatattatatatttgatgactccaa |
42256328 |
T |
|
| Q |
220 |
ccagcatgtgaagataaacaacaaccaaaagagagttcctgcaccggtgcccctataatataaaccgaagcttaaatcatgaaaatagtaacctggactt |
319 |
Q |
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| T |
42256329 |
ccagcatgtgaagataaacaacaaccaaa----agtaattgtac----gataatataatataaaccgaagcttaaatcatgaaaataataacctggactt |
42256420 |
T |
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| Q |
320 |
ttccttggctcaaaatagctactgatcaaatttagcctcaaattgatcacgccacttcaagacattaaatatagttgtgttcc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42256421 |
ttccttggctcaaaatagctactgatcaaatttagcctcaaattgatcacgccacttcaagacattaaatatagttgcgttcc |
42256503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 20 - 402
Target Start/End: Original strand, 19934544 - 19934923
Alignment:
| Q |
20 |
caattaatccacaaagtgagaataaagaccacaatatttctttcaaataatgataatccacaaagatgaat-aatctaccattttaaagttctttaagat |
118 |
Q |
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| T |
19934544 |
caattagtccacaaaatgagaataaagacaacaatatttctttcaaataatgataatccacaaagatcaattaatctaccattttaaagttctttaagat |
19934643 |
T |
|
| Q |
119 |
gctactaatttctcaaattccctgatattcgtctagctcaattcaaataagccaatatcacaagaatcatgtaat---tagtattatatatttgatgact |
215 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||| |
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| T |
19934644 |
gctactaatttctcaaattcccttatattcgtctagctcaattcaaataagccaatatcacaagaatcatgtaattaataatattctatatttgatgact |
19934743 |
T |
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| Q |
216 |
ccaaccagcatgtgaagataaacaacaaccaaaagagagttcctgcaccggtgcccctataatataaaccgaagcttaaatcatgaaaatagtaacctgg |
315 |
Q |
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| T |
19934744 |
ccaaccagcatgtgaagataaacaacaaccaaa----agtaattgtac----gataatataatataaaccggaggttaaatgatgaaaatagtaacctgg |
19934835 |
T |
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| Q |
316 |
acttttccttggctcaaaatagctactgatcaaatttagcctcaaattgatcacgccacttcaagaca-ttaaatatagttgtgttcc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||| ||||| |
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| T |
19934836 |
acttttccttggctcaaaatagctactgatcaaatttatcctcaaattgatcacgccacttcaagacatttaactatagttgcgttcc |
19934923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 30 - 402
Target Start/End: Original strand, 6670707 - 6671064
Alignment:
| Q |
30 |
acaaagtgagaataaagaccacaatatttctttcaaataatgataatccacaaagatgaat-aatctaccattttaaagttctttaagatgctactaatt |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6670707 |
acaaagtgagaataaagaccacaatatttctttcaaataatgataa--------gatgaattaatctaccattttaaagttctttaagatgctactaatt |
6670798 |
T |
|
| Q |
129 |
tctcaaattccctgatattcgtctagctcaattcaaataagccaatatcacaagaatcatgtaattagtattatatatttgatgactccaaccagcatgt |
228 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
6670799 |
tctcaaattcccttatattcgtctagctcaattcaaataagccaatatcacaagaatcatgtaattaatattctatatttgatgactccaaccagcatgt |
6670898 |
T |
|
| Q |
229 |
gaagataaacaacaaccaaaagagagttcctgcaccggtgcccctataatataaaccgaagcttaaatcatgaaaatagtaacctggacttttccttggc |
328 |
Q |
| |
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|||||||||||||||||||| ||| || || | |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6670899 |
gaagataaacaacaaccaaa----agtaattgtac----gataatataatataaaccggagcttaaatgatgaaaatagtaacctggacttttccttggc |
6670990 |
T |
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| Q |
329 |
tcaaaatagctactgatcaaatttagcctcaaattgatcacgccacttcaagacattaaatatagttgtgttcc |
402 |
Q |
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|||||||||||||| || | |||||||||||||||||||| |||||||||||||||||| |||||||| ||||| |
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| T |
6670991 |
tcaaaatagctactaataatatttagcctcaaattgatcatgccacttcaagacattaactatagttgcgttcc |
6671064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 20 - 181
Target Start/End: Original strand, 5695468 - 5695628
Alignment:
| Q |
20 |
caattaatccacaaagtgagaataaagaccacaatatttctttcaaataatgataatccacaaagatgaat-aatctaccattttaaagttctttaagat |
118 |
Q |
| |
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||||||||||||||||||||||||||||| | |||| | | || ||| || ||||||||||||||||||| ||||||||| ||| |||||||||||||| |
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| T |
5695468 |
caattaatccacaaagtgagaataaagactataataatacattgaaacaacaataatccacaaagatgaattaatctaccaatttgaagttctttaagat |
5695567 |
T |
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| Q |
119 |
gctactaatttctcaaattccctgatattcgtctagctcaattcaaataagccaatatcacaa |
181 |
Q |
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|||||||||||| | ||| || ||||| ||| |||||||||| || ||||||||||||||| |
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| T |
5695568 |
gctactaatttcccgaat--ccgtatatttgtccagctcaattctaacaagccaatatcacaa |
5695628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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