View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_low_17 (Length: 365)
Name: NF15408_low_17
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 48584648 - 48584987
Alignment:
| Q |
18 |
tgaacaaatgaattattggtacaatttttctctctgcaaaagtattcaattaccacttctcgcttgcctatttagcaatcagtgtaaagttatgaaaaat |
117 |
Q |
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| T |
48584648 |
tgaacaaatgaattattggtacaatttttctccctgcaaaagtattcaattaccacttctcgcttgcctatttagcaatcagtgtaaagttatgaaaaat |
48584747 |
T |
|
| Q |
118 |
aagcagttgttttatgctaattggaaacaaaactatgcaattcagacttccaaatatttcagcaattgaatactcagagatacaagttaagctt----gt |
213 |
Q |
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| T |
48584748 |
aagcagttgttttatgctaattagaaacaaaactatgcaattcagacttccaaatatttcagcaattgaatactcagagatacaagttaagcttgttcgt |
48584847 |
T |
|
| Q |
214 |
tcattcatgtttaaataat-catgaggaataaattattgctacacctcagcagttgcaaactgaattgatgaaagcctatatagaaaatccaattttgaa |
312 |
Q |
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| T |
48584848 |
tcattcatgttttaataatccatgaggaataaattattgctacacctcagcagttgcaaactgaattgatgaaagcctatacagaaaatccaattttgaa |
48584947 |
T |
|
| Q |
313 |
gtaaagtgcagataaaaaagacttatcagtatcacctatg |
352 |
Q |
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| T |
48584948 |
gtaaagtgcagataaaaaagacttatcagtatcacctatg |
48584987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 37 - 340
Target Start/End: Original strand, 48553300 - 48553601
Alignment:
| Q |
37 |
tacaatttttctctct-gcaaaagtattcaattaccacttctcgcttgcctatttagcaatcagtgtaaagttatgaaaaataagcagttgttttatgct |
135 |
Q |
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| T |
48553300 |
tacaacttttctctttcgcaaaagtattcagttaccacttctcgctttcctatttagcaatccatgtaaagttaagaaatacaag---ttgtttaat-ct |
48553395 |
T |
|
| Q |
136 |
aattggaa-acaaaactatgcaattcagacttccaaatatttcagcaattgaatactcagagatacaagttaagcttgttcattcatgtttaaataatca |
234 |
Q |
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| T |
48553396 |
aatttgaatacaaaacattgcagtgcaaacttccaaatattgcagcaattgaatactcagagatacaagttaagcttgctcattcatgttttaataatct |
48553495 |
T |
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| Q |
235 |
tgaggaataaattattgctacacctcagcagttgcaaactgaattgatgaaagcctatatagaaaatccaattttgaagtaaagtgcagataaaaaagac |
334 |
Q |
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| T |
48553496 |
tgaggaataaaatatttcaacacctcagcagttgcaaactgaattgatgaaagcctatacagaaaacccaattttgacataaagtgcagacaaaaaagac |
48553595 |
T |
|
| Q |
335 |
ttatca |
340 |
Q |
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|||||| |
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| T |
48553596 |
ttatca |
48553601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 85 - 238
Target Start/End: Complemental strand, 15771306 - 15771152
Alignment:
| Q |
85 |
ctatttagcaatcagtgtaaagttatgaaaaataagcagttgttttatgctaattggaa-acaaaactatgcaattcagacttccaaatatttcagcaat |
183 |
Q |
| |
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|||||||||| || ||||||||||||||||| |||||||| ||||| |||||| ||| ||||||| |||||| ||||||| || ||||||||||| |
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| T |
15771306 |
ctatttagcagtccatgtaaagttatgaaaaacaagcagtttctttatactaatttgaatacaaaaccttgcaatacagacttttgaacatttcagcaat |
15771207 |
T |
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| Q |
184 |
tgaatactcagagatacaagttaagcttgttcattcatgtttaaataatcatgag |
238 |
Q |
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||||| ||| ||||||||||| || ||| |||||||||||| ||||||| |||| |
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| T |
15771206 |
tgaatgctctgagatacaagtaaaacttaatcattcatgttttaataatcttgag |
15771152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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