View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_low_2 (Length: 586)
Name: NF15408_low_2
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 586
Target Start/End: Original strand, 1797380 - 1797955
Alignment:
| Q |
15 |
ttatgaattgaaacacaaccttgcctctcaaaatcgtaaaggtcactatgagggaccaaaattttcatgttttaatcttccaccaactctcaagatatta |
114 |
Q |
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| T |
1797380 |
ttatgaattgaaacacaaccttgcctctcaaaatcgtaaaggtcactatgagggaccacaattttcatgttttaatcttccaccaactctcaagatatta |
1797479 |
T |
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| Q |
115 |
ttactaaannnnnnn--gccaactacattactcataacnnnnnnnntgggtagagttaccatgataagtttacacaaattaaaatcgtttatttgtcttt |
212 |
Q |
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| T |
1797480 |
---ctaaatttttttttgccaactacattactcataaaaaaaaa---gggtagagttaccatgataagtttacacaaattaaaattgtttatttgtcttt |
1797573 |
T |
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| Q |
213 |
cactatttattttttatatataacataaatagttgaaaacaaatggatgattttgataggcatcaactcaacatagataactccgtcatcttcgattgat |
312 |
Q |
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| T |
1797574 |
cactatttattttttatatataacataaatagttgaaaacaaatggatgattttgataggtatcaactcaacatagataactccttcatcttcgattgat |
1797673 |
T |
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| Q |
313 |
agaaaaataagatttttc-ttttatagtataaaaaaggttgt-ttatttgaactaccatttgaacgacaacttatgagacaatcatagatttgcaaataa |
410 |
Q |
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| T |
1797674 |
agaaaaataaattttttctttttatagtataaaaaaagttgtgttatttgaactaccatttgaatgacaacttacgagacaatcatagatttacaaataa |
1797773 |
T |
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| Q |
411 |
aactaacaacctccatcctaagctctcacctctctccttagtaacttctccaccgtcgttcctttcttcaaccggctcccaaatccaaacttactctatc |
510 |
Q |
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| T |
1797774 |
aactaacaacctccatcctaagctctcacctctctcctcagtaacttctccaccgtcgttcctttcttcaaccgactcccaaatccaaacttactctatc |
1797873 |
T |
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| Q |
511 |
------tagttgaccaagttggtggtgcgaagagcggcgttggccctccacaccacctttcttctagatccggccgcatctc |
586 |
Q |
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| T |
1797874 |
aagatgtagctgaccgtgttagtggtgtgaagagcggcgttggccctccacaccacctttcttctagatctggccgcatctc |
1797955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 412
Target Start/End: Original strand, 44977395 - 44977453
Alignment:
| Q |
354 |
ttatttgaactaccatttgaacgacaacttatgagacaatcatagatttgcaaataaaa |
412 |
Q |
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| T |
44977395 |
ttatttgaacaaccatttgaacgaaaacttatgagacaaccataaatttacaaagaaaa |
44977453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 193 - 269
Target Start/End: Original strand, 19315987 - 19316064
Alignment:
| Q |
193 |
aaaatcgtttatttgtctttcactatttattttt-tatatataacataaatagttgaaaacaaatggatgattttgat |
269 |
Q |
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| T |
19315987 |
aaaatcattcatttgtctttcatcatttatttttatagatatatcataaatagtggaagacaaatgaatggttttgat |
19316064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 412
Target Start/End: Original strand, 34084526 - 34084583
Alignment:
| Q |
355 |
tatttgaactaccatttgaacgacaacttatgagacaatcatagatttgcaaataaaa |
412 |
Q |
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| T |
34084526 |
tatttgaacaactatttgtatgacaacttatgagacaaccataaatttgcaaaaaaaa |
34084583 |
T |
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