View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_low_20 (Length: 353)
Name: NF15408_low_20
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_low_20 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 30 - 353
Target Start/End: Original strand, 53415140 - 53415468
Alignment:
| Q |
30 |
acaatcaaaaactcatattatttcacttctcaaaagagtctcaatctcttggtgaccagcatgtaatcttgatgctcctgctaaagtatgagctacatat |
129 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53415140 |
acaatcaaaaactcgtattatttcacttctcaaaagagtctcaatctcttggtgacgagcatgtaatcttgatgctcctgctaaagtatgagctacatgt |
53415239 |
T |
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| Q |
130 |
attatgtccctatatttactaactaagatggagatgttgcagnnnnnnnnn-----gatgtctatcataatgcaaataaacaggtacatttcacaaaatt |
224 |
Q |
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| T |
53415240 |
attatgtccctatatttactaactaagatggagatgttgcagaaaaaaaaaaaaaagatgtctatcataatgcaaataaacaggtacatttcacaaaatt |
53415339 |
T |
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| Q |
225 |
cactttggattcctccattttaacgtgcacaaactgttgtgtattttcctggttttctaagtagcattgatgtgtcttttccataacaggttgcaatcat |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53415340 |
cactttggattcctccattttaacgtgcacaaactgttctatattttcctggttttctaagtagcattgatgtgtcttttccataacaggttgcaatcat |
53415439 |
T |
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| Q |
325 |
ttgtaatcatcagtgtagtgtttcaaaaa |
353 |
Q |
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| T |
53415440 |
ttgtaatcatcagtgtagtgtttcaaaaa |
53415468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 181 - 353
Target Start/End: Original strand, 53411570 - 53411739
Alignment:
| Q |
181 |
gatgtctatcataatgcaaataaacaggtacatttcacaaaattcactttggattcctccattttaacgtgcacaaactgttgtgtattttcctggtttt |
280 |
Q |
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| T |
53411570 |
gatgtctatcaacatgcaaataaacaggtacgtttcacgaaattcatttttgattccttcattataccgtgcacagact--tgtgtattttcctggtttt |
53411667 |
T |
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| Q |
281 |
ctaagtagcattgatgtgtcttttccataacaggttgcaatcatttgtaatcatcagtgtagtgtttcaaaaa |
353 |
Q |
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| T |
53411668 |
ctaagttgcattgatgtgtctttt-cataacaggttgcaatcatttgtaatcatcaacgcagtgtttcaaaaa |
53411739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 181 - 353
Target Start/End: Complemental strand, 53367240 - 53367071
Alignment:
| Q |
181 |
gatgtctatcataatgcaaataaacaggtacatttcacaaaattcactttggattcctccattttaacgtgcacaaactgttgtgtattttcctggtttt |
280 |
Q |
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| T |
53367240 |
gatgtctatcagcatgcaaataaacaggtacgtttcacgaaattcatttttgattccttcattataccgtgcacagac--ttgtgtattttcctggtttt |
53367143 |
T |
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| Q |
281 |
ctaagtagcattgatgtgtcttttccataacaggttgcaatcatttgtaatcatcagtgtagtgtttcaaaaa |
353 |
Q |
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| T |
53367142 |
caaagtttcattgatgtgtctttt-cataacagggtgcaatcatttgtaatcatcaacgcagtgtttcaaaaa |
53367071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 250 - 352
Target Start/End: Original strand, 53318138 - 53318240
Alignment:
| Q |
250 |
tgcacaaactgttgtgtattttcctggttttctaagtagcattgatgtgtcttttccataacaggttgcaatcatttgtaatcatcagtgtagtgtttca |
349 |
Q |
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|||||| | |||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
53318138 |
tgcacagattgttgtgtgttttcctgattttctaagtagcattgatgtgtcttttgcataacaggttgcaatcatttgtaatcatcaacgtagtgtttca |
53318237 |
T |
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| Q |
350 |
aaa |
352 |
Q |
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||| |
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| T |
53318238 |
aaa |
53318240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 1930268 - 1930224
Alignment:
| Q |
30 |
acaatcaaaaactcatattatttcacttctcaaaagagtctcaat |
74 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
1930268 |
acaatcaaaatctcatattatttcctttctcaaaagagtctcaat |
1930224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 121
Target Start/End: Complemental strand, 1930199 - 1930156
Alignment:
| Q |
78 |
ttggtgaccagcatgtaatcttgatgctcctgctaaagtatgag |
121 |
Q |
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|||||||| ||||||||||||||| || |||||||||||||||| |
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| T |
1930199 |
ttggtgacgagcatgtaatcttgacgcccctgctaaagtatgag |
1930156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 26924578 - 26924536
Alignment:
| Q |
32 |
aatcaaaaactcatattatttcacttctcaaaagagtctcaat |
74 |
Q |
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|||||||| ||||| ||||||||||||| |||||||||||||| |
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| T |
26924578 |
aatcaaaatctcatcttatttcacttcttaaaagagtctcaat |
26924536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 244 - 336
Target Start/End: Original strand, 14922787 - 14922879
Alignment:
| Q |
244 |
ttaacgtgcacaaactgttgtgtattttcctggttttctaagtagcattgatgtgtcttttccataacaggttgcaatcatttgtaatcatca |
336 |
Q |
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| T |
14922787 |
ttaatgtgcacagattgttgtgtattttactggtttgctaagttgcatcgacgtgtcttttccataacaggttgcaatcatttgtaatcatca |
14922879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 1100931 - 1100975
Alignment:
| Q |
30 |
acaatcaaaaactcatattatttcacttctcaaaagagtctcaat |
74 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1100931 |
acaatcaaaatctcatattatttcacttctcaaaagagtctcaat |
1100975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 29370453 - 29370409
Alignment:
| Q |
30 |
acaatcaaaaactcatattatttcacttctcaaaagagtctcaat |
74 |
Q |
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||||| ||||||| ||||||||||||||||||||||||| ||||| |
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| T |
29370453 |
acaataaaaaacttatattatttcacttctcaaaagagtttcaat |
29370409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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