View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15408_low_3 (Length: 562)

Name: NF15408_low_3
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15408_low_3
NF15408_low_3
[»] chr3 (4 HSPs)
chr3 (354-559)||(42296173-42296378)
chr3 (21-270)||(42296462-42296711)
chr3 (222-258)||(15974521-15974557)
chr3 (219-263)||(15974578-15974621)
[»] chr5 (3 HSPs)
chr5 (382-521)||(29170173-29170312)
chr5 (219-257)||(8418592-8418630)
chr5 (219-263)||(12401904-12401948)
[»] chr6 (1 HSPs)
chr6 (354-422)||(21977635-21977703)
[»] chr7 (2 HSPs)
chr7 (219-263)||(26474311-26474355)
chr7 (219-263)||(26550751-26550795)
[»] chr1 (3 HSPs)
chr1 (219-255)||(19716800-19716836)
chr1 (223-257)||(20425450-20425484)
chr1 (219-263)||(31288357-31288401)
[»] scaffold0604 (1 HSPs)
scaffold0604 (219-258)||(4694-4733)
[»] chr8 (1 HSPs)
chr8 (219-258)||(18188737-18188776)


Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 354 - 559
Target Start/End: Complemental strand, 42296378 - 42296173
Alignment:
Q  354 tcaatctggtaaccttcccctatagcgggtattatgaacctgaaaacccttatgcttgttctttttcttggccttggaaaccaccttattaaagggctct 453  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  42296378 tcaatctggtaacctacccctatagcgggtattatgaacctgaaaacccttatgcttgttctttttcttggcattggaaaccacctcattaaagggctct 42296279  T
Q  454 tccataagagcattacaatttttcaaataattgatggccgcctctcgctcttcctcatcagtataaactcgcggccccatgtcatcctttccttttctgt 553  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| ||    
T  42296278 tccataagagcattataatttttcaaataattgatggccgcctctcgctcttcctcatcggtataaactcgcggcctcatgtcaccctttccttttcagt 42296179  T
Q  554 gttgct 559  Q
    ||||||    
T  42296178 gttgct 42296173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 21 - 270
Target Start/End: Complemental strand, 42296711 - 42296462
Alignment:
Q  21 tatttcaaaaactgttttaaaatggttnnnnnnn-tatcatttctcaatgccatttaacaaatattttctccttgcnnnnnnnatcagggacaccatata 119  Q
    |||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  42296711 tatttcaaaaactgttttaaaatggttaaaaaaaatatcatttctcaatgccatttaacaaatattttctccttgctttttt-atcagggacaccatata 42296613  T
Q  120 caaaggagaaacattaataatctatctaannnnnnnnnnnnnnnggagcaaaaaggggtgtagttgtgaaccaactgccacaccctaaaaatatagataa 219  Q
    |||||||||||||| ||| ||||||||||               || |||||||||||||||||||||||||||||| ||| ||| ||||||||||||||    
T  42296612 caaaggagaaacatcaatgatctatctaattttttaatttttttggggcaaaaaggggtgtagttgtgaaccaactgtcacgcccaaaaaatatagataa 42296513  T
Q  220 aaaagagaagggagacataaaccaaaaccttctcaaacagggaagtaaatc 270  Q
    ||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  42296512 aaaagagaaggggaacataaaccaaaaccttctcaaacagggaagtaaatc 42296462  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 258
Target Start/End: Complemental strand, 15974557 - 15974521
Alignment:
Q  222 aagagaagggagacataaaccaaaaccttctcaaaca 258  Q
    |||||||||| ||||||||||||||||||||||||||    
T  15974557 aagagaagggggacataaaccaaaaccttctcaaaca 15974521  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 15974621 - 15974578
Alignment:
Q  219 aaaaagagaagggagacataaaccaaaaccttctcaaacagggaa 263  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||    
T  15974621 aaaaggagaaggg-gacataaaccaaaaccttctcaaacaaggaa 15974578  T

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Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 382 - 521
Target Start/End: Original strand, 29170173 - 29170312
Alignment:
Q  382 gtattatgaacctgaaaacccttatgcttgttctttttcttggccttggaaaccaccttattaaagggctcttccataagagcattacaatttttcaaat 481  Q
    ||||||||||||||||||||||| ||||| ||||||||| ||||||| || ||||| | | | |||||||||||  |   ||||  || ||| |||||||    
T  29170173 gtattatgaacctgaaaacccttctgcttcttctttttcgtggccttagacaccacttcagtgaagggctcttctgtggcagcagaacgattcttcaaat 29170272  T
Q  482 aattgatggccgcctctcgctcttcctcatcagtataaac 521  Q
    |  |||| ||||||||||  |||||||||||||| |||||    
T  29170273 atatgattgccgcctctctatcttcctcatcagtgtaaac 29170312  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 219 - 257
Target Start/End: Original strand, 8418592 - 8418630
Alignment:
Q  219 aaaaagagaagggagacataaaccaaaaccttctcaaac 257  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  8418592 aaaaagagaaaggaaacataaaccaaaaccttctcaaac 8418630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 12401904 - 12401948
Alignment:
Q  219 aaaaagagaagggagacataaaccaaaaccttctcaaacagggaa 263  Q
    |||| |||||||| |||||| ||||||||||||||||||| ||||    
T  12401904 aaaaggagaagggggacatagaccaaaaccttctcaaacaaggaa 12401948  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 354 - 422
Target Start/End: Original strand, 21977635 - 21977703
Alignment:
Q  354 tcaatctggtaaccttcccctatagcgggtattatgaacctgaaaacccttatgcttgttctttttctt 422  Q
    ||||||||||||||| ||| || ||| |||||||||||||||||||||||||||  | |||||||||||    
T  21977635 tcaatctggtaacctacccttagagcaggtattatgaacctgaaaacccttatgtattttctttttctt 21977703  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 26474355 - 26474311
Alignment:
Q  219 aaaaagagaagggagacataaaccaaaaccttctcaaacagggaa 263  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||    
T  26474355 aaaaggagaagggggacataaaccaaaaccttctcaaacaaggaa 26474311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 263
Target Start/End: Complemental strand, 26550795 - 26550751
Alignment:
Q  219 aaaaagagaagggagacataaaccaaaaccttctcaaacagggaa 263  Q
    |||| |||||||| |||||||||||||||||||||||||| ||||    
T  26550795 aaaaggagaagggggacataaaccaaaaccttctcaaacaaggaa 26550751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 19716800 - 19716836
Alignment:
Q  219 aaaaagagaagggagacataaaccaaaaccttctcaa 255  Q
    |||||||||||||||||||| ||||||||||||||||    
T  19716800 aaaaagagaagggagacatagaccaaaaccttctcaa 19716836  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 223 - 257
Target Start/End: Complemental strand, 20425484 - 20425450
Alignment:
Q  223 agagaagggagacataaaccaaaaccttctcaaac 257  Q
    ||||||||| |||||||||||||||||||||||||    
T  20425484 agagaagggggacataaaccaaaaccttctcaaac 20425450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 263
Target Start/End: Original strand, 31288357 - 31288401
Alignment:
Q  219 aaaaagagaagggagacataaaccaaaaccttctcaaacagggaa 263  Q
    |||| |||||||| |||||| ||||||||||||||||||| ||||    
T  31288357 aaaaggagaagggggacatagaccaaaaccttctcaaacaaggaa 31288401  T

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Target: scaffold0604 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 258
Target Start/End: Complemental strand, 4733 - 4694
Alignment:
Q  219 aaaaagagaagggagacataaaccaaaaccttctcaaaca 258  Q
    |||| |||||| ||||||||||||||||||||||||||||    
T  4733 aaaaggagaagtgagacataaaccaaaaccttctcaaaca 4694  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 219 - 258
Target Start/End: Original strand, 18188737 - 18188776
Alignment:
Q  219 aaaaagagaagggagacataaaccaaaaccttctcaaaca 258  Q
    |||| |||||||| ||||||||||||||||||||||||||    
T  18188737 aaaaggagaagggggacataaaccaaaaccttctcaaaca 18188776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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