View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_low_31 (Length: 278)
Name: NF15408_low_31
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 6602957 - 6602695
Alignment:
| Q |
1 |
tttccaaatacacaaacatgtcaacacttacgaccctccccatctgtccagacgggtgtgacagggagcacacgacatcgccgtaagcaaatgttctctc |
100 |
Q |
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| T |
6602957 |
tttccaaatccacaaacatgtcaacacttacgaccctccccatctgtccagacgggtgtgacagggagcacacgacatcgccgtaagcaaatgttctctc |
6602858 |
T |
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| Q |
101 |
gaatgaaaggaaatcatttatcctaccgatgcttcctctaaacttgataatatgctctgagcttggccaccatagagaaaatcaatatcctcttgatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602857 |
gaatgaaaggaaatcatttatcctaccgatgcttcctctaaacttgataatatgctctgagcttggccaccatagagaaaatcaatatcctcttgatcat |
6602758 |
T |
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| Q |
201 |
cagtgccggtactctcactggaagactcccagtcagaatcagtcatctgagcttccatcaact |
263 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602757 |
cagtgccgctactctcactggaagactcccagtcagaatcagtcatctgagcttccatcaact |
6602695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 241
Target Start/End: Complemental strand, 35440140 - 35439909
Alignment:
| Q |
11 |
cacaaacatgtcaacacttacgaccctccccatctgtccagacgggtgtgacagggagcacacgacatcgccgtaagcaaatgttctctcgaatgaaagg |
110 |
Q |
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| T |
35440140 |
cacaaacaaatcaacacttgtcacccttcccatctgtccagttggatctgacacggagcagaccacatcaccatgaacaaaagttctctcaaatgagaga |
35440041 |
T |
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| Q |
111 |
aaatcatttatcctaccgatgctt-cctctaaacttgataatatgctctgagcttggccaccatagagaaaatcaatatcctcttgatcatcagtgccgg |
209 |
Q |
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| T |
35440040 |
aaatcatcaatcttcccaatgctttcctctaaacttgataatatgttctgagcttgaccaccatattgaaaatcaatttcttcttgatcctcactactgc |
35439941 |
T |
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| Q |
210 |
tactctcactggaagactcccagtcagaatca |
241 |
Q |
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| T |
35439940 |
tgctgtcactggaagtctcccattccgaatca |
35439909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 3700588 - 3700851
Alignment:
| Q |
1 |
tttccaaatacacaaacatgtcaacacttacgaccctccccatctgtccagacgggtgtgacagggagcacacgacatcgccgtaagcaaatgttctctc |
100 |
Q |
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||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| ||||||||||| |||||||||||||| |
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| T |
3700588 |
tttccaaatccactaacacgtcaacacttacgaccctccccatctgtccagatgggtctgacaaggagcacacaacatcgccgtatgcaaatgttctctc |
3700687 |
T |
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| Q |
101 |
gaatgaaaggaaatcatttatcctaccgatgctt-cctctaaacttgataatatgctctgagcttggccaccatagagaaaatcaatatcctcttgatca |
199 |
Q |
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|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700688 |
gaatgagaggaaatcatttatcctaccgatgctttcctctaaacttgataatatgctctgagcttggccaccatagagaaaatcaatatcctcttgatcg |
3700787 |
T |
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| Q |
200 |
tcagtgccggtactctcactggaagactcccagtcagaatcagtcatctgagcttccatcaact |
263 |
Q |
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||| ||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3700788 |
tcactgccgctgctctcactggaagactcccagtctgaatcagtcatctgagcttccatcaact |
3700851 |
T |
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