View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_low_36 (Length: 256)
Name: NF15408_low_36
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_low_36 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 9 - 237
Target Start/End: Original strand, 3545878 - 3546105
Alignment:
| Q |
9 |
cataggtcgtgtaataatatggtgattatataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatcagcaattatg |
108 |
Q |
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| T |
3545878 |
cataggtcgtgtaataatatggtgattatataaaaaacaattacattggtaaacttgttaaatgtttaaagatgttgaattaaaattatcagcaattatg |
3545977 |
T |
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| Q |
109 |
taatgttaaatatgcaaaaatccgttaaatatgtttcaccacgcccgttgcaaatattccgttcttatatatgtggatgcaaattttatgtatcgatata |
208 |
Q |
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| T |
3545978 |
taatgttaaatatgccaaaatccgttaaatatg-ttcaccacgcccgttgcaaatattccgtgcttatatatgtggatgcaaattttatgtatcgatata |
3546076 |
T |
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| Q |
209 |
attatatatagactttcaatcaaatttca |
237 |
Q |
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| T |
3546077 |
attgtatacagattttcaatcaaatttca |
3546105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 115
Target Start/End: Original strand, 24864999 - 24865081
Alignment:
| Q |
33 |
attatataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatcagcaattatgtaatgtt |
115 |
Q |
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| T |
24864999 |
attatataaaaaataattaaatttttaatattgttgaatgtttaaaaatattaaataaaaattatcagaattaatgtaatgtt |
24865081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 3421404 - 3421331
Alignment:
| Q |
42 |
aaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatcagcaattatgtaatgtt |
115 |
Q |
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| T |
3421404 |
aaaacaattacattgctaatattgtgaaatgtttaaaggtattaaataaaaattatcaacattaatgtaatgtt |
3421331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 21118615 - 21118553
Alignment:
| Q |
37 |
tataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatca |
99 |
Q |
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||||||||| |||||||||| |||| |||| ||||||||||| || || ||| |||||||||| |
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| T |
21118615 |
tataaaaaataattacattgttaatattgtcaaatgtttaaaaatattaaataaaaattatca |
21118553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 99
Target Start/End: Original strand, 494269 - 494332
Alignment:
| Q |
36 |
atataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatca |
99 |
Q |
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| T |
494269 |
atataaaaaataatttcattgttaatattgtcaaatgtttaaagatattaaatgaaaattatca |
494332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 7183890 - 7183937
Alignment:
| Q |
33 |
attatataaaaaacaattacattggtaatcttgttaaatgtttaaaga |
80 |
Q |
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||||||||||||||||||||||| ||||| |||| |||| |||||||| |
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| T |
7183890 |
attatataaaaaacaattacattagtaatattgtgaaatatttaaaga |
7183937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 99
Target Start/End: Complemental strand, 3927664 - 3927602
Alignment:
| Q |
37 |
tataaaaaacaattacattggtaatcttgttaaatgtttaaagatgttgaattaaaattatca |
99 |
Q |
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||||||||||||||| |||| |||| |||| ||||||||||| ||||| ||| || ||||||| |
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|
| T |
3927664 |
tataaaaaacaattatattgataatattgtgaaatgtttaaaaatgttaaataaatattatca |
3927602 |
T |
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