View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_low_40 (Length: 242)
Name: NF15408_low_40
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_low_40 |
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Alignment Details
Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 225
Target Start/End: Complemental strand, 8377695 - 8377465
Alignment:
| Q |
5 |
tgtccaagaatattagtgaaatagacatagagaattagagatattttttcattaacaaatggtttattatttctttaactaacatctaaatggcattagc |
104 |
Q |
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| T |
8377695 |
tgtccgagaatattagtgaaatagacatagagaattagagatattttttcattaacaaatggtttattatttctttaactaacatctaaatggcattagc |
8377596 |
T |
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| Q |
105 |
tagtaaattcaatagtgtttaattt----------agatgagatgatgtatttcaagtttctttcgacttcattagatgtttctttctacttcttttgac |
194 |
Q |
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| T |
8377595 |
tagtaaattcaatggtgtttaatttatatgagatgagatgagatgatgtagttcaagtttctttcgacttcattagatgtttctttcgacttcttttgac |
8377496 |
T |
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| Q |
195 |
ctcttgaaggagattttgtaagtattgttcg |
225 |
Q |
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| T |
8377495 |
ctcttgaaggagattttgtaagtattgttcg |
8377465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 8436011 - 8436120
Alignment:
| Q |
17 |
ttagtgaaatagacatagagaattagagatattttttcattaacaaatggtttattatttctttaactaacatctaaatggcattagctagtaaattcaa |
116 |
Q |
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| T |
8436011 |
ttagtgaaatagacatagtgagttagagatatttttttattaacaaaatgtttgttacatatttaactaacacctaaatggcattacctaataaactc-- |
8436108 |
T |
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| Q |
117 |
tagtgtttaatt |
128 |
Q |
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| T |
8436109 |
tagtgtttaatt |
8436120 |
T |
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