View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15408_low_47 (Length: 232)
Name: NF15408_low_47
Description: NF15408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15408_low_47 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 13 - 192
Target Start/End: Complemental strand, 50725338 - 50725159
Alignment:
| Q |
13 |
agtatggtataacacgtttatgtatctttgaattctaaatcaacattgttacacaaagaatcagcaagtaaatgttaagataaacaataacaaggagaat |
112 |
Q |
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| T |
50725338 |
agtatggtataacacgtttatgtgtctttgaattctaaatcaacattgttacacaaagaatcagcaagtaaatgttaagataaacaataacaaggagaat |
50725239 |
T |
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| Q |
113 |
gaagaagaacaagatgaagatctgggaaagatgggaataaggatattttttgtcaacacttaagtcaatctagtttcctt |
192 |
Q |
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| T |
50725238 |
gaagaagaacaagatgaagatctgggaaagatgggaataaggatattttttgtcaacacttaagtcaatctagtttcctt |
50725159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 50787512 - 50787687
Alignment:
| Q |
13 |
agtatggtataacacgtttatgtatctttgaattctaaatcaacattgttacacaaagaatcagcaagtaaatgttaagataaacaataacaaggagaat |
112 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50787512 |
agtatggtataacacgtttatgtgtctttgaattctaaatcaacattgttacacaaagaatcagcaagtaaatgttaagataaacaataacaaggagaat |
50787611 |
T |
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| Q |
113 |
gaagaagaacaagatgaagatctgggaaagatgggaataaggatattttttgtcaacacttaagtcaatctagttt |
188 |
Q |
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| T |
50787612 |
gaagaagaacaagatgaagatctgggaaagatgggaataaggatattttttgtcaacacttaagtcaatctagttt |
50787687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 21347672 - 21347852
Alignment:
| Q |
13 |
agtatggtataacacgtttatgtatctttgaattctaaatcaacattgttacacaaagaatcagcaagtaaatgttaagataaacaataacaaggagaat |
112 |
Q |
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|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| |
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| T |
21347672 |
agtatggtataacatgtttatgtgtctttgaattctaaatcaacattgttacacaaagaatcaacaaggaaatgttaagataaacaataataaggagaat |
21347771 |
T |
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| Q |
113 |
gaagaagaacaagatgaagatctgggaaagatgggaataaggata-ttttttgtcaacacttaagtcaatctagtttcctt |
192 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
21347772 |
gaagaagaacaagatgaagatctgggaaatatgggaataaggatatttttttgtcaacactaaagtcaatctagtttcctt |
21347852 |
T |
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